NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTCTAGTTCTGAGCCCCATTTTTTAATGGGGTTATT
TGAATTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATATTGGATAT
TAGTCCCATATCTGATTTAGGATAGATAAAGATCCTTTCCCAATGTGTTG
GTGGCCTTTTTGTCTTATTGATGTTGTCTTTTGCCTTACAGAAGCTTTGC
AATATTATGAGGTCCCATTTGTCGATTCTCGATCTTACAACACAAGCCAT
TGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTT
TCCCCATGTTGTCCTCTACAAGTTTCAGTGCCTCTGGTTTTATGTAGAGT
TTCTTGATCCACTTAGATTTGACCTTAGTAAAAGGAGATAGAAATGGATC
AATTTGCATTCTTCTACATGATAACTGCCAGTTGTGCCAGCACCATATGT
TGAAAATGCTGTCTTTTTTCCATTGGATGGTTTTAGCTCCCTTGTCAAAG
ATCAAGTCACCATAGATGTGTGGGTTCATTTCTGGGTATTCCATTCTATT
CCATTGGTCTACTTGTGTGTTGCTATACCAGTACCATGCAGTTTTTATCA
CAATTGCTCTGTAGTTCAGCTTTAGGTCAGGCATGGTGATTCCACCATAG
GTTCTTTTATCCTTGAGAAGAGTTTTTGCTAGGTTTTTTGTTATT

NCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTCCTATAGAAAGTCAT
CAGGTGCGTTGTTTAAAAAACAAGGGTCTAACCCAGTGCTTCTCAACCTC
CCTAATGCTTTTACCCTTTAGTACCATTCCTCATGTTGTGGTGATCCCCA
ACCATAAAATTATTTTCATTGCTACTTCATGACTATAATTTTGCCACTGC
TATGAAAATGTGCTTTTTATTGTCATTTTCTCTTCCCAGAATAAAAGATA
TGTGACATCGAAGAGGAAGGAGGAGCTGGTGGGACATGAGCCGAAGAGGA
CTAGCAGGAGGGGCAGCTAGGGGCTGAGGTGGGGGCAGAGCTAATGCCAG
GAAGAATAACCAGGATGTATGTATGCATGAGGGTCCCGTGGTGAAATCTA
GGTTTTTTTGAACACATCTTTTTTTTTTTTTAAATCAAACCCCAATTAAA
AATAAGTCATAAAATCCATGTTAATCTAATGTGGTAAAGTAAAAAAATAA
TAATCAAGTTAATGTCCTTTTCTCAAATGTTACCCTTCCCATAGAGGTTC
CACAGAGACCAAAAAAGTATTGTTTTAGAATATGGCTGAGAGCTCAGTGT
CAGCATGTGCAAACCAAAAAGACTTTCATGCACTTGTGTACAGGTTCAAC
ATGAGTCATAGAAAGATGCAAAATCTCAACTCCCATTACAAAGGACA

Query= MSMg01no529_k03.g1 MSMg01no529_k03.g1 CHROMAT_FILE:
MSMg01no529_k03.g1 PHD_FILE: MSMg01no529_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:41 2005
         (649 letters)



>mm_chrX_56282241_56283291
          Length = 1051

 Score = 1201 bits (621), Expect = 0.0
 Identities = 643/653 (98%), Gaps = 6/653 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ccctttcctatagaaagtcatcaggtgcgttgtttaaaaaacaagggtctaacccagtgc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 ccctttcctatagaaagtcatcaggtgcgttgtttaaaaaacaagggtctaacccagtgc 974

                                                                        
Query: 61   ttctcaacctccctaatgcttttaccctttagtaccattcctcatgttgtggtgatcccc 120
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 973  ttctcaacctccctaatgcttttaccctttagtaccgttcctcatgttgtggtgatcccc 914

                                                                        
Query: 121  aaccataaaattattttcattgctacttcatgactataattttgccactgctatgaaaat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  aaccataaaattattttcattgctacttcatgactataattttgccactgctatgaaaat 854

                                                                        
Query: 181  gtgctttttattgtcattttctcttcccagaataaaagatatgtgacatcgaagaggaag 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853  gtgctttttattgtcattttctcttcccagaataaaagatatgtgacatcgaagaggaag 794

                                                                        
Query: 241  gaggagctggtgggacatgagccgaagaggactagcaggaggggcagctaggggctgagg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793  gaggagctggtgggacatgagccgaagaggactagcaggaggggcagctaggggctgagg 734

                                                                        
Query: 301  tgggggcagagctaatgccaggaagaataaccaggatgtatgtatgcatgagggtcccgt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733  tgggggcagagctaatgccaggaagaataaccaggatgtatgtatgcatgagggtcccgt 674

                                                                        
Query: 361  ggtgaaatctaggtttttttgaacacatctttttttttttttaaatcaaaccccaattaa 420
            |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 673  ggtgaaatctaggtttttttgaacacatc--tttttttttttaaatcaaaccccaattaa 616

                                                                        
Query: 421  aaataagtcataaaatccatgttaatctaatgtggtaaagtaaaaaaataataatcaagt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  aaataagtcataaaatccatgttaatctaatgtggtaaagtaaaaaaataataatcaagt 556

                                                                        
Query: 481  taatgtccttttctcaaatgttacccttcccatagaggttccacagagaccaaaaaagta 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 555  taatgtccttttctcaaatgttacccttcccatagaggttccacagagaccaaaaaagga 496

                                                                        
Query: 541  ttgttttagaatatggctgagagctcagtgtcagcatgtgcaaaccaaaaagactttcat 600
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495  ttgtttcagaatatggctgagagctcagtgtcagcatgtgcaaaccaaaaagactttcat 436

                                                                 
Query: 601  gcacttgtgtacaggttcaacatgagtcat----agaaagatgcaaaatctca 649
            ||||||||||||| ||||||||||||||||    |||||||||||||||||||
Sbjct: 435  gcacttgtgtacaagttcaacatgagtcatagacagaaagatgcaaaatctca 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1051
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1041
Effective search space:   665199
Effective search space used:   665199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)