NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGTCAAACTTTGAGAAACTTTTCTTCTCTAGTTCCTTTTA
ACTTATCATTAGGTTTTTGGATCCAGCAAATAGTAAATTGTTCTGAAATG
TAAACTTTCTTAGATATTATTAGGATGCCTGGATTTATCCTAAGAATATT
ATCTTAAGCTCACAGACAGTAAGTAGGGTTTCCTTAAGTCTATTAGTTTA
GGGTCTTAGATGGAGTCAGCTGTAGAGTGTTTTGTAGCTCTTAGTAGTAA
CTGTCAGCTGCCACACCCTTCTTTCTCCAGCAGTTGTCAACTTTCAGTAG
TTTTTCAGATCTTAGTGGCTTATTTAAATAAAAGAAGGAGGGGCAGGAGG
AGGAGAAGAGGAGGAAAAGGAAGAGGAAGAGGAGGAAAAGATGACATTGA
GTTGTAAGTAGAACACGTTAGGGTGGTTTAATGGGGTAAATTGGAAATGG
GTGTTATCTTACTGAATTTTATACATGTATGAAGTTACCAAATAATAAAA
TATATAATAAAAGCAGTAACTATCAATTTGTCATTCAAGTTGTTATATTT
TAGTGAAGAAATGAAATAGTTTTTCTAGGATAGCTATTAAGTAGCACTTA
TACAGCATATAGGAGTTTTATTGTTAATAAAATTTTGGTAGAATGCCTTT
CTTGATAGTTTAGAAATATCTGGATTAGTCTTCTTCTAATAAGGTTTGAG
GATCAATA

NAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTTCCTTTCTTAATTTCTAG
TATTTGACATTTGTGACTAGTGACTACATATTGTAGTTTGAAAATAAAAT
GATCCTATAGGATCATGTATTTGAACATTTAGCCCCCAGCCATCAGCACT
GTTTTGGAAGTTTCAGGAGGCAAAAATTGGCTTGGCAAAGTGAGTTTCTG
AAATAGCCCTTGGTTTGTGATATCCAGGCTCCACTCCTTGTCTATTCTGA
CTCCTGACTCTGAGTGCAATGTGACCTGATTCACATTCTTCCTGCAATGC
CTTTCAACCATGATAGACTATACTTTTAAACTGTTCCCAAAATAAAGCTT
TCTTCTTTTTAGTTGCTTCTTGGCATATATATTTGGTCTCAGCAATGAGA
AAAACAATACTACATTTTGGCATTGAGGAATGCAGATGTTGCCATGGTAA
ATTTGATCATATAAATGGTAGGCCTTTGGAAATGGTCTGTTGGAGGAATG
TAAAAGAACTTGGAGTTCTGTGCTACACAATCCCTAACATGCTGTAAATA
TAACCTGAGCTATAACTTAGGAGTTCTGACTACCAGGAGAAACATGGATA
GCAGAGGCTCATCTCATGAGGTTTCAAAAAGAATAAGTACTCTATCAGAA
TCTGTGACAGACGACATTCCTGTTACATTTAGCCAATTATCTGGCTTCAT
TCTGCTTGG

Query= MSMg01no530_h17.b1 MSMg01no530_h17.b1 CHROMAT_FILE:
MSMg01no530_h17.b1 PHD_FILE: MSMg01no530_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:49 2005
         (709 letters)



>mm_chrX_109152815_109153923
          Length = 1109

 Score = 1340 bits (693), Expect = 0.0
 Identities = 702/705 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtcaaactttgagaaacttttcttctctagttccttttaacttatcattagg 64
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtcaaactttgagaaaattttcttctctagttccttttaacttatcattagg 264

                                                                       
Query: 65  tttttggatccagcaaatagtaaattgttctgaaatgtaaactttcttagatattattag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttggatccagcaaatagtaaattgttctgaaatgtaaactttcttagatattattag 324

                                                                       
Query: 125 gatgcctggatttatcctaagaatattatcttaagctcacagacagtaagtagggtttcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgcctggatttatcctaagaatattatcttaagctcacagacagtaagtagggtttcc 384

                                                                       
Query: 185 ttaagtctattagtttagggtcttagatggagtcagctgtagagtgttttgtagctctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaagtctattagtttagggtcttagatggagtcagctgtagagtgttttgtagctctta 444

                                                                       
Query: 245 gtagtaactgtcagctgccacacccttctttctccagcagttgtcaactttcagtagttt 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 gtagtaactgtcagctgccacacccttctttctccagcagctgtcaactttcagtagttt 504

                                                                       
Query: 305 ttcagatcttagtggcttatttaaataaaagaaggaggggcaggaggaggagaagaggag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcagatcttagtggcttatttaaataaaagaaggaggggcaggaggaggagaagaggag 564

                                                                       
Query: 365 gaaaaggaagaggaagaggaggaaaagatgacattgagttgtaagtagaacacgttaggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaaaggaagaggaagaggaggaaaagatgacattgagttgtaagtagaacacgttaggg 624

                                                                       
Query: 425 tggtttaatggggtaaattggaaatgggtgttatcttactgaattttatacatgtatgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggtttaatggggtaaattggaaatgggtgttatcttactgaattttatacatgtatgaa 684

                                                                       
Query: 485 gttaccaaataataaaatatataataaaagcagtaactatcaatttgtcattcaagttgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttaccaaataataaaatatataataaaagcagtaactatcaatttgtcattcaagttgt 744

                                                                       
Query: 545 tatattttagtgaagaaatgaaatagtttttctaggatagctattaagtagcacttatac 604
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 745 tatattttagtgaagaaatgaaatagttttactaggatagctattaagtagcacttatac 804

                                                                       
Query: 605 agcatataggagttttattgttaataaaattttggtagaatgcctttcttgatagtttag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agcatataggagttttattgttaataaaattttggtagaatgcctttcttgatagtttag 864

                                                        
Query: 665 aaatatctggattagtcttcttctaataaggtttgaggatcaata 709
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aaatatctggattagtcttcttctaataaggtttgaggatcaata 909


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)