BAC Information

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BAC

Clone NameMSMg01-530L02
ChromosomeX (Build37)
Map Location 148,349,944 - 148,350,663
singlet/doubletsinglet
Overlap geneHuwe1
Upstream geneLOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760, Phf8, LOC385448, LOC237116
Downstream geneLOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2, Gpr143, LOC100039874, LOC667147, EG624124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530L02.T7 (MSMg01no530_l02.b1)MSMg01-530L02.TJ (MSMg01no530_l02.g1)
ACCAG599270AG599271
length769770
length of high quality
(start - end)		724 (46 - 769)587 (77 - 663)
definitionCHROMAT_FILE: MSMg01no530_l02.b1 PHD_FILE: MSMg01no530_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:06 2005CHROMAT_FILE: MSMg01no530_l02.g1 PHD_FILE: MSMg01no530_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACGAGAATCTGCTCCAGAGATGGCCACGGCAGAATCTCTAGTGG
AAGAACTCTCCGAGGATGCAGGGGGGGAGCTAGGGAAAGAAATCATCCTT
CTTTATACAGTTTTCCCATAAAAAGCAAACACAAACCAAACAACAAAAAC
ATTCCTAATACCCATCTCAGATAGAACACATCAATCACAGTGCAACAAGC
ATGCCTGATAGTGTTTAGCTTGAAATAACTTCTAATGCATTCCTAATCTC
CTCTTGGCTATATAGTACTTACCTGTCCTCAGGTGGCTGGTTGGATTCTC
TTGATACATCAGGTCTGCCTTGCACTTCTGCCACAACTGATGGCGCATCC
CCAGGAGTGGAACTACCTGCTGTGGGCTGCTCAGAACTGCCAGCTGCTGG
AGTGTCACCCACAGCCTCTTCTAACGTACAGGAAGCCAGGCTGCTGGTGT
CCATGGGAGAACCTTCCAGCTGACTGCTGACAGCTGTTAACGCGTCTGAA
TCTTCAGCTCTCTCTGGGGAAAGAGAGGCTAGAAGGAAGTTAAGAGTGAG
AAATTAGATGGCTACTTTGAATCAAGGTTATGACAGGCAAAGTCTTTGGT
AGGGTTGTTTCCTTTTGCAACAGTTAATACAGACTCATCTACCACTTGAT
TATCTATTGCCCACTCTTCCATCTCAACTGCCCTTAAGTTCCTTAAGACT
TTTCTATGTACTACACGTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAAGGAGTAATAATAAAATA
TATAAGACACAATAAGATAAAAACAAAAACCAAACAAATCAGAGTAGTAG
AAAACAACCAAACAAGAAAAAGAGCCAAAGAAAAAGCACAGAAAATGTAC
ATAGACATGGAGACACTTGTTTGCACACACAGGAATCCCATAAAAACACA
AACTCAGAAATAATATGTATGCAAAGTACCTGTAAAGTTAAAAAAATTCC
CTGGCTTAACATTATGAGACAACCTCCAAAAATACTGTTGAGTTCATTTT
GTATTGACCATCTATTGTCAGGCATGTGGCCTTTCCTTAAGAATGGTTTG
TTTGCCCAGTGAGACTCTATAGTGGCTATTTCTGGTTGTCAACTTAACCC
CCTTGTACACAACTCACTCCTTTTAAAGAAAAAAAATTGAAATGTAAGAC
TGTGTAAGATTTGTTTTAAAACTGTACAGTCTTTTTTTTGTATAGTTAAC
ACATTACCAAATGTGTCTTTAGATAGCCCTGTCTTGGTGGTATTTTCAGT
AACCACTAACCTTGCCTGGTACGGTCTAGGTGTTATAAATTGGCATGGAA
ATTTAAAGCAGATTCTTGTTGGTGCACAACACCAATTAGTTATATATGGG
GACAGAATTTTTTTCTCTCTTTTTGGTTTTAGGGNTTTTGTTTGTTTTTC
ATCTTCAATTACCACTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_l02.b1 MSMg01no530_l02.b1 CHROMAT_FILE:
MSMg01no530_l02.b1 PHD_FILE: MSMg01no530_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:06 2005
         (724 letters)



>mm_chrX_148349740_148350863
          Length = 1124

 Score = 1377 bits (712), Expect = 0.0
 Identities = 718/720 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacgagaatctgctccagagatggccacggcagaatctctagtggaagaactct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 gaattccacgagaatctgctccagagatggccacggcagaatctctagtggaagaactct 865

                                                                       
Query: 65  ccgaggatgcagggggggagctagggaaagaaatcatccttctttatacagttttcccat 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 864 ccgaggatgcagggggggagctagggaaagaaatcatccttctttatacagtttccccat 805

                                                                       
Query: 125 aaaaagcaaacacaaaccaaacaacaaaaacattcctaatacccatctcagatagaacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaaaagcaaacacaaaccaaacaacaaaaacattcctaatacccatctcagatagaacac 745

                                                                       
Query: 185 atcaatcacagtgcaacaagcatgcctgatagtgtttagcttgaaataacttctaatgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atcaatcacagtgcaacaagcatgcctgatagtgtttagcttgaaataacttctaatgca 685

                                                                       
Query: 245 ttcctaatctcctcttggctatatagtacttacctgtcctcaggtggctggttggattct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttcctaatctcctcttggctatatagtacttacctgtcctcaggtggctggttggattct 625

                                                                       
Query: 305 cttgatacatcaggtctgccttgcacttctgccacaactgatggcgcatccccaggagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttgatacatcaggtctgccttgcacttctgccacaactgatggcgcatccccaggagtg 565

                                                                       
Query: 365 gaactacctgctgtgggctgctcagaactgccagctgctggagtgtcacccacagcctct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaactacctgctgtgggctgctcagaactgccagctgctggagtgtcacccacagcctct 505

                                                                       
Query: 425 tctaacgtacaggaagccaggctgctggtgtccatgggagaaccttccagctgactgctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctaacgtacaggaagccaggctgctggtgtccatgggagaaccttccagctgactgctg 445

                                                                       
Query: 485 acagctgttaacgcgtctgaatcttcagctctctctggggaaagagaggctagaaggaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagctgttaacgcgtctgaatcttcagctctctctggggaaagagaggctagaaggaag 385

                                                                       
Query: 545 ttaagagtgagaaattagatggctactttgaatcaaggttatgacaggcaaagtctttgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaagagtgagaaattagatggctactttgaatcaaggttatgacaggcaaagtctttgg 325

                                                                       
Query: 605 tagggttgtttccttttgcaacagttaatacagactcatctaccacttgattatctattg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagggttgtttccttttgcaacagttaatacagactcatctaccacttgattatctattg 265

                                                                       
Query: 665 cccactcttccatctcaactgcccttaagttccttaagacttttctatgtactacacgtt 724
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 cccactcttccatctcaactgcccttaagttccttaagacttttctatgtaccacacgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1124
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1114
Effective search space:   795396
Effective search space used:   795396
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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