NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGAAGAAAGTTGACTATTCAGTGACATTCAGAATTGCCTCTG
GCATTACACTATCACTTTAATAAAAGCTAGGTCACTGCCTTACACAGGAA
TTTACCATCAACTAGGAAAAAGGAAGTTTAAGACCTAAAGAGGAATGAGA
GTAGATACTTAGAACTGTAGATAGCTGAGTTACACCCATACACAAGTATT
TACAATGGCCTAGAGGGAAGGTAGACTACCAAGACTTGTTTTTCAACCTC
CCCCTGGCTTTAGACCTTGTTGTCCTCCCTTATGGGGCCCCTATTGGGAC
TCCTACTATTGATTTCCTTCGGTCCTTGGGCATTTCAGAAATTGACTCGA
TTTGTTAAATCTCAAATTGATTCATCTCTTTCAAGTGCATTTGTTTCAGT
TCATTACCATTGGCTGGACGTTGGTGATAACAAGCAGGTTACTGGAGAAG
AGGCAGACGCGGATGCCGCTTCATCACCCTCTTCTCGGGGAGAGAGACTC
AATTTCCATAAAATGCTTAAGTAAGATCATTCCCCTCCCCCTAAATTAGG
CCATCAGTCTGATGCCACAAATCATTTATAGATTGCCGTAGTCTGTGCTT
TTCCGACATGGTAATATACGTTCTCGCCACATTGGAAACTAAACAGTCAT
CCCAGGCTAGACACATCAAAAATTAAAACTTGAAGCCGTCGCCCGTGAGA
GTTGTAAGACT

NTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAACCTGAAGAGAGCAGAGTGA
GAAATTGTTCAGGAGAATGCAGGTTCTCTCAGAGGGAAACAAAGTGCTAT
GAATATGTGAGTGCAGCTTTGCACAGAGGCCATTGTGCCTGTGAGTTCAT
GTTCCTGCTGAGGACAGATTGCAATGGAGACAAAAGTGTAGGTGCCTGCT
GATGTCTCGAGTTGAGGATTAACCTGTTAGTGCAGGTGACTGCAGGGGCC
AGGGAAGGGACCTGGGCAAATAAGTGCAGGAGCCTTCAGAAGACTAGGTT
ATGTGGGGACAGTGGGCTATACACAGACAAGCTGGTCTCCAGTTGAGTTG
AGGTCTGAACTCTAGTAGAACCTGATGGGTGGCAATTCCCACATACATGG
GACAGAAGGTGTTCCCTCATGTCTTCTGGCCCCCTGGCTCCTGTTGAATT
TACCCCACATACCCCACAAGAGAGGATAGTGGCTAGCAGTCATGTACACA
ATGTCCCAAGCTTCTGACCTTCAGGCTAGACTTCTCCCAGTTACCTAGCA
ACAACAAGATAACAAGTCCACTATAAGAGGGGCTGCTTGGCCCACTCCTC
ACTCTTTTAAGCTTTTACTTTCTTTAGTCTCTCTCTAAGCCCTCTCTCTC
TAAGCCTTCACTTTTCTTACTCTCTAACTCTCTTTCTCTCTTTCCTTTCC
CCCTTCTCTCCTGTTGGNCA

Query= MSMg01no531_f12.g1 MSMg01no531_f12.g1 CHROMAT_FILE:
MSMg01no531_f12.g1 PHD_FILE: MSMg01no531_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:56 2005
         (686 letters)



>mm_chrX_4255553_4256638
          Length = 1086

 Score = 1104 bits (571), Expect = 0.0
 Identities = 673/743 (90%), Gaps = 57/743 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctcagaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctcagaggg 260

                                                                       
Query: 61  aaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcctgtgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcctgtgagt 320

                                                                       
Query: 121 tcatgttcctgctgaggacagattgcaatggagacaaaagtgtaggtgcctgctgatgtc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tcatgttcctgctgaggacagattgcaatggagaaaaaagtgtaggtgcctgctgatgtc 380

                                                                       
Query: 181 tcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaagggacctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaagggacctggg 440

                                                                       
Query: 241 caaataagtgcaggagccttcagaagactaggttatgtggggacagtgggctatacacag 300
           ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 441 caaataagtgcagtagccttcagaagacttggttatgtggggacattgggctaaacacag 500

                                                                       
Query: 301 acaagctggtctccagttgagttgaggtctgaactctagtagaacctgatgggtggcaat 360
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 acaagttggtctccagttgagttgaggtctgaactctagtagaacctgatgggtggaaat 560

                                                                       
Query: 361 tcccacatacatgggacagaaggtgttccctcatgtcttctggccccctggctcctgttg 420
           |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 561 tcccacctacatgggacagaaggcgttcccttatgtcttctggccccctggctcctgttg 620

                                                                       
Query: 421 aatttacc----ccacataccccacaagagaggatagtggctagcagtcatgtacacaat 476
           || |||||    |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagttaccacccccacattccccacaagagaggatagtggctagcagtcatgtacacaat 680

                                                                       
Query: 477 gtcccaagcttctgaccttcaggctagacttctcccagttacctagcaacaacaagataa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcccaagcttctgaccttcaggctagacttctcccagttacctagcaacaacaagataa 740

                                                                       
Query: 537 caagtccactataagaggggctgcttggcccactcctcactct----------------- 579
           |||||||||||||||||||||||||||||||||||||||||||                 
Sbjct: 741 caagtccactataagaggggctgcttggcccactcctcactctcttaagcttttactttc 800

                                                                       
Query: 580 ----------------------------------tttaagcttttactttctttagtctc 605
                                             ||||||||||||||||||||||||||
Sbjct: 801 tttactctccctcttactctctctctcttactcttttaagcttttactttctttagtctc 860

                                                                       
Query: 606 tctctaagccctctctctct--aagccttcacttttcttactctctaactctctttctct 663
           ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||
Sbjct: 861 tctctaagccctctctctctctaagccttcacttttcttacactctaactctctttctct 920

                                  
Query: 664 ctttcctttcccccttctctcct 686
           |||||||||||||||||||||||
Sbjct: 921 ctttcctttcccccttctctcct 943


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)