Query= MSMg01no531_f24.b1 MSMg01no531_f24.b1 CHROMAT_FILE:
MSMg01no531_f24.b1 PHD_FILE: MSMg01no531_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:58 2005
(618 letters)
>mm_chrX_143699219_143700236
Length = 1018
Score = 340 bits (176), Expect = 1e-97
Identities = 504/634 (79%), Gaps = 58/634 (9%)
Strand = Plus / Plus
Query: 8 ttctttagaagtcccaagggatctagcacctttg--aagtctaccaaa-ttttcatatct 64
|||||| | |||| ||||||||||| ||| |||| | ||||||||| ||||| |||||
Sbjct: 182 ttctttggtagtctcaagggatctatcacatttgcta--tctaccaaacttttcgtatct 239
Query: 65 gttgaggcatgtctaggcct---ttcactatatgctcaacagtctatccagcagtcatca 121
||| ||||| ||| || || |||| || | ||||||||||||||||||||||||||
Sbjct: 240 gttcaggcaactctgggtctgtcttca-taca--ctcaacagtctatccagcagtcatca 296
Query: 122 tcttccc-aaaagattctgggaacatc-agagtgtgccaagtgtattcattaacattttt 179
|||||| ||||||||||||||||||| | | | | || |||||| |||| ||||||| |
Sbjct: 297 tcttcctgaaaagattctgggaacatcca-acttttcccagtgtactcataaacatttgt 355
Query: 180 ctttcgtctcaggttctttgggaatgtattcatgtgt-cctatgga-tgacaggaacatt 237
|||| |||||||| ||||| ||||||| ||||||||| || | | | || ||||||||||
Sbjct: 356 ctttggtctcaggatctttaggaatgtcttcatgtgtgccaaag-actg-caggaacatt 413
Query: 238 gctacaagtcccaaagcctattggacattcctcaccaatacaagcatgtcaatcccctcc 297
|| ||| | |||||||||| || | ||||||||||||| ||||||| |||||||||||||
Sbjct: 414 gccacatgccccaaagcctcttagccattcctcaccaacacaagcaagtcaatcccctcc 473
Query: 298 accatctatg--aaaagaaactgtgacaact----tgtattcacaagcaactcttg---t 348
||||||| || ||||| ||||| ||| | ||||| ||||||||||||||| |
Sbjct: 474 accatctttgcaaaaag---ctgtggcaaatgccctgtatccacaagcaactcttgagct 530
Query: 349 -a--gcat------aaatctctccattgttctcaccatctactcaggtgaatggacaagc 399
| |||| |||| | | |||| ||||||||||||||||||| |||||||||
Sbjct: 531 gaatgcatcagcacaaattttttcattacactcaccatctactcaggtgcctggacaagc 590
Query: 400 ttacctcaat-caagaatctactttgggacagcccatagctgcccagggagttcaacaac 458
| ||| ||| || ||| | |||||||||||| |||||||||| | ||||||| || |||
Sbjct: 591 ctcccttaatgca-gaaaccactttgggacagaccatagctgcacggggagttgaagaac 649
Query: 459 ttttg--ttgtccagcccagg---------ttataaagaaagtgacaagcaggaaatagg 507
||||| || | | |||||| ||||||||||||||||||||||||| ||||
Sbjct: 650 ttttgcctt--caaacccagggactctaggttataaagaaagtgacaagcaggaactagg 707
Query: 508 aatttttccatcttaccaagtacttctgggaatttccttacctgcagagggaa--tggta 565
||||||||||||| |||||| | |||||||||||| ||||||| ||| |||| | ||
Sbjct: 708 aatttttccatctgcccaagtgcctctgggaatttctttacctgtagaaggaactt--ta 765
Query: 566 ggatcatgaccatctgtacaaagggttctgggaa 599
||||| || ||| || |||| ||||||||||||
Sbjct: 766 ggatcttggtcatttgcacaaggggttctgggaa 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_f24.g1 MSMg01no531_f24.g1 CHROMAT_FILE:
MSMg01no531_f24.g1 PHD_FILE: MSMg01no531_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:59 2005
(549 letters)
>mm_chrY_1310935_1311882
Length = 948
Score = 431 bits (223), Expect = e-125
Identities = 457/543 (84%), Gaps = 33/543 (6%)
Strand = Plus / Minus
Query: 22 ttctcaaggaattaattaatgtagttcttaatata-ca-atgtctgtactgaacatatac 79
|||||||||||||||| || || |||||| ||||| || | ||||||||||||||||||
Sbjct: 948 ttctcaaggaattaataaaagtggttctttatataccaca--tctgtactgaacatatac 891
Query: 80 agaccacttatatttcaatctcctaaatagcaactcattttatagcacttacattacatt 139
|||||||||||||| | |||||||||||| |||||| || ||||||| || |||| ||||
Sbjct: 890 agaccacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcatt 831
Query: 140 aagtgcaaaagtaatccagagattatttaaaataaagaaggatcaggggatatggcccag 199
||| ||||||||||||||||||| ||||||||||||||| || | | ||| |||||||||
Sbjct: 830 aagggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggagatggcccag 771
Query: 200 ag--acaatgccaggagtgtgt--tcaaacattcacctacaacaccagtgcttgag-att 254
| | |||| |||| || || |||||||||||||||| |||||||| || ||
Sbjct: 770 gggta----gcca--agtgagtgatcccacattcacctacaacaacagtgctt-aggatg 718
Query: 255 ttgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggctcactatc-- 312
||||||||||||||||||||||||| |||||||||||||||||||| | |||| |
Sbjct: 717 --gggaggggcagagacaggaagatgactgtggcttcctgaaagccagccccact--cct 662
Query: 313 agctcagcaagaaacccagtcacaagggga-taagttatggag-gaaaagagtagatcac 370
|||||||||||| ||| |||||||||| | ||| ||| |||| ||| ||| ||| |||
Sbjct: 661 agctcagcaagagacctggtcacaaggg-agtaaattagggagtgaag-gagcagagcac 604
Query: 371 actatacccttccctagcctctgaacttacctgtacagttctctatgcagactcacataa 430
|| ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||
Sbjct: 603 acaatacccttccctagcctctgaacttacctgtacaggtctgtatgcatacacacataa 544
Query: 431 ataagattaaa--atatgcaagaggttattttgcatagcttatgttcaaaagcagtgttg 488
||| ||||||| |||| |||||||||| |||||||| |||| | |||||||| |||||
Sbjct: 543 atatgattaaagtatat--aagaggttatgttgcatagattatatgcaaaagcaatgttg 486
Query: 489 ttttagactagaaacctgaggacttt-atatcattat-agttcctggagcaaactcccaa 546
| |||| |||| ||||||||||||| ||||||||| ||| |||||||||||||||| |
Sbjct: 485 tcttagcctagggacctgaggacttttatatcattaggagt-cctggagcaaactcccca 427
Query: 547 gat 549
|||
Sbjct: 426 gat 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space: 505582
Effective search space used: 505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
