BAC Information

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BAC

Clone NameMSMg01-532D10
ChromosomeX (Build37)
Map Location 165,619,475 - 165,796,710
singlet/doubletdoublet
Overlap geneArhgap6, Amelx, Hccs, LOC100040950, BC022960
Upstream geneFrmpd4, EG667822, EG637566, Msl31
Downstream geneMid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532D10.T7 (MSMg01no532_d10.b1)MSMg01-532D10.TJ (MSMg01no532_d10.g1)
ACCAG600427AG600428
length738759
length of high quality
(start - end)		553 (53 - 605)535 (81 - 615)
definitionCHROMAT_FILE: MSMg01no532_d10.b1 PHD_FILE: MSMg01no532_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:05 2005CHROMAT_FILE: MSMg01no532_d10.g1 PHD_FILE: MSMg01no532_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,796,200 - 165,796,710)(165,619,475 - 165,620,009)
sequence
NNNTTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATTTTATCCTGTGTTTCATCTTGAAAGCTTAGAAGGC
ACACTGATGTACTGTGACCTCAAGGTAGGGTAGAGCATAGACAGGCAAAG
TATTCTCAGCTCTCATCTGAAAAATATTCTCCTAATTTCCTCCAGCCATC
ACAGGCTGCCCACTGGGTTGCTGTTTGTGTAAGATAGATAGTTCCCCTCT
TTCTCTTTCTCCCCTCTCTTTCCCTCCCTCTTTCTCTCTGTCTCCTATTC
TGCCCATCTGCCTACTGTTAACTTCAGCTTTAACTTGATCCAGGATTCAG
TCAAGGACAGGCTTGGACCATGTCCCTGTACCTATGTTGACAGCATACTA
CCTACTTTCATATACTCTACAACAGAGGCAGTAAGGAGAATGAGTGAACT
AGAGATGTCTCCACTATCGTAGATTCAGGGTTGTTTCCACCAGGCTCCAT
TGTTGAACAAAGGGCCTATCCCAGTTAATTGGCAATCATGACTGAGTTCT
CTTCATCTTAGGTCTTAGAATGTGCCCTCTGCCCTCTACCCTTTAGGTCA
TTCCCACAGCCTGGGGTAATATCTTTTAGAGGTCTACATACCTTTGGAAA
TAGATGGTTTAGCTGAGTCTCTTCAAATTACTCAGTGAGAATGTTCCAGT
ACACCATGACTCATACGTATGCTTCTAAAAGTTCTACN

NGGTGTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAATTAGAATTTAAATAT
GCCATAAGACCTATAGTGTTAATTATGAGGCCATGTCACCAAATTCATTT
GTAAAAACCAAACAGATATAATGTATGCTTGGATCAAGAAAGGCAAAGAT
CTATGGTTTCTGCAATTCTGGGCTCTGATTCATTTTGAAACTTAGAACTC
TGGGACCAATTCTGTTAAGTCACTTTCCAAGGATTTGTCTTTTGCTGGTT
TCAAGGTATACTCACCACTTCTTCCCGCTTGGTCTTGTCTGTCGCTGGCC
AAGCTTCCAGAGGCAGCTCAGGAAGAATGGGGGACAGGGGCTGCATGGAG
AACAGTGGAGGCAGAGGTGGCTGTGGTGCCAGGGGCTGCATGGGATGCAG
AGGTGACTGGGGCTGCATGGGCTGATGAGACTGGGGTGGAATGGCCTGGG
GCTGGAAGGGCTGCTGGAAGGGCTGCTGGGCGGATGGAGGGATGTTTGGC
TGATGGTGTTGGGTTGGAGTCATGGAGTGGTGGCCAGGAACTGGCATCAT
TGGTTGCTGGGGGGCCACGGGCTGTTGAGCTGGGACCACGGGAAGGTGGT
GATGAGGCTGAAGGGTGTGACTCGGGGGATGCTGTTGAGACAGCACAGGG
AAGATTTGGTGGTGCAGCCATCATCCCCTGGGTTCGTAACCTTAAGACGG
ATACTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_d10.b1 MSMg01no532_d10.b1 CHROMAT_FILE:
MSMg01no532_d10.b1 PHD_FILE: MSMg01no532_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:05 2005
         (553 letters)



>mm_chrX_165795758_165796710
          Length = 953

 Score =  988 bits (511), Expect = 0.0
 Identities = 511/511 (100%)
 Strand = Plus / Minus

                                                                       
Query: 43  gaaggcacactgatgtactgtgacctcaaggtagggtagagcatagacaggcaaagtatt 102
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 gaaggcacactgatgtactgtgacctcaaggtagggtagagcatagacaggcaaagtatt 894

                                                                       
Query: 103 ctcagctctcatctgaaaaatattctcctaatttcctccagccatcacaggctgcccact 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ctcagctctcatctgaaaaatattctcctaatttcctccagccatcacaggctgcccact 834

                                                                       
Query: 163 gggttgctgtttgtgtaagatagatagttcccctctttctctttctcccctctctttccc 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gggttgctgtttgtgtaagatagatagttcccctctttctctttctcccctctctttccc 774

                                                                       
Query: 223 tccctctttctctctgtctcctattctgcccatctgcctactgttaacttcagctttaac 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tccctctttctctctgtctcctattctgcccatctgcctactgttaacttcagctttaac 714

                                                                       
Query: 283 ttgatccaggattcagtcaaggacaggcttggaccatgtccctgtacctatgttgacagc 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttgatccaggattcagtcaaggacaggcttggaccatgtccctgtacctatgttgacagc 654

                                                                       
Query: 343 atactacctactttcatatactctacaacagaggcagtaaggagaatgagtgaactagag 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 atactacctactttcatatactctacaacagaggcagtaaggagaatgagtgaactagag 594

                                                                       
Query: 403 atgtctccactatcgtagattcagggttgtttccaccaggctccattgttgaacaaaggg 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atgtctccactatcgtagattcagggttgtttccaccaggctccattgttgaacaaaggg 534

                                                                       
Query: 463 cctatcccagttaattggcaatcatgactgagttctcttcatcttaggtcttagaatgtg 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cctatcccagttaattggcaatcatgactgagttctcttcatcttaggtcttagaatgtg 474

                                          
Query: 523 ccctctgccctctaccctttaggtcattccc 553
           |||||||||||||||||||||||||||||||
Sbjct: 473 ccctctgccctctaccctttaggtcattccc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_d10.g1 MSMg01no532_d10.g1 CHROMAT_FILE:
MSMg01no532_d10.g1 PHD_FILE: MSMg01no532_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:05 2005
         (535 letters)



>mm_chrX_165619275_165620209
          Length = 935

 Score = 1027 bits (531), Expect = 0.0
 Identities = 534/535 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataattagaatttaaatatgccataagacctatagtgttaattatgaggccatgtcacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tataattagaatttaaatatgccataagacctatagtgttaattatgaagccatgtcacc 260

                                                                       
Query: 61  aaattcatttgtaaaaaccaaacagatataatgtatgcttggatcaagaaaggcaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattcatttgtaaaaaccaaacagatataatgtatgcttggatcaagaaaggcaaagat 320

                                                                       
Query: 121 ctatggtttctgcaattctgggctctgattcattttgaaacttagaactctgggaccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatggtttctgcaattctgggctctgattcattttgaaacttagaactctgggaccaat 380

                                                                       
Query: 181 tctgttaagtcactttccaaggatttgtcttttgctggtttcaaggtatactcaccactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgttaagtcactttccaaggatttgtcttttgctggtttcaaggtatactcaccactt 440

                                                                       
Query: 241 cttcccgcttggtcttgtctgtcgctggccaagcttccagaggcagctcaggaagaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcccgcttggtcttgtctgtcgctggccaagcttccagaggcagctcaggaagaatgg 500

                                                                       
Query: 301 gggacaggggctgcatggagaacagtggaggcagaggtggctgtggtgccaggggctgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggacaggggctgcatggagaacagtggaggcagaggtggctgtggtgccaggggctgca 560

                                                                       
Query: 361 tgggatgcagaggtgactggggctgcatgggctgatgagactggggtggaatggcctggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggatgcagaggtgactggggctgcatgggctgatgagactggggtggaatggcctggg 620

                                                                       
Query: 421 gctggaagggctgctggaagggctgctgggcggatggagggatgtttggctgatggtgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctggaagggctgctggaagggctgctgggcggatggagggatgtttggctgatggtgtt 680

                                                                  
Query: 481 gggttggagtcatggagtggtggccaggaactggcatcattggttgctggggggc 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggttggagtcatggagtggtggccaggaactggcatcattggttgctggggggc 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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