NNGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATAGTATTTTATCATGAAACATTAAAAATTAAAGCCAG
TGTGCTACTAACTCTTCAATGTAGTTAAAGAGAAACAATTAATTGTTGCA
TAAATTAGTTAAGTAGATATAATACTAACATACAAATGAGAAACACTCAG
AAAGATCAAAGTTGTTATTATTCATACTACTTAATTTCAAATCAAGCAGA
TCAAAGTTTATTGGCAGAAGGGGATGGATAGAAAAATTCTGATAAGGATT
GTGAGAGTGCATATTAATTTTTATTGTCATGAAAGTATTGTGTAGATAAA
AAAATTGTCATGGCATACATTAAATATGATTAATTTATGATTGCATGAAC
ATTATACAAAACAAGAGGAAATAATTATATATTATACAAAACTATAAGGA
AATAATCAATGAATTTTTTTACTAGCAAACTATTTTTAAAAGGAGAAACA
AGGTTTATTTACAAAGTTATTTAAAGTCAGTCAGGGTATTATTTCAGATT
CTCCATTTGTCTCTAAATAAATAAAAATAGATAATCTCCATATTAAAGAA
AGATGAATGAAATGATATTATACATAAAAAACCTTTTTCCCATTTACAAA
AGCCACACTGAATACATGCTAGCAATTTCTGTTTTATTTTAATATGGTAA
ATCCATAATTTGTTGGCAAAAGTAGAATGAAAATCACACTCTCATTGGTT
AT

NNCCACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATGTAGGGGAATAGGAGA
GAAAAGAAGAAGAAAGGAGAGGAGGAAGAGATAGAAATAGAGTTAGATGG
AGGGAAGAAATGAGGGGGAGTAGATGATAGATAGATAAATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGAGAGGC
AGACAGATATTTGTGATCTATCTGATCTTCCGGGAGAAAGATTTCAAGAT
GAGACGGAATAGAGAAGCGTCAGCAACTTTTTTATTAAATGGCGTGAAAA
CAAATTCATTCTTTTGTCTCTTCTCCGACTGAGACTAACCCAATTTAAAT
TCCTGTGAAGCAGATGCTCCCTGGTACCCTTGCATATTGCACGTATGTTT
GCGCCTGTTTTAAGTTAGGCGTGCTGCTCTTGTGTATGGCACAGCCATTC
CCAATCTAACCGAGACCCAACTGCTTCTCTTATACTATCCATCCACCTAA
CACTGAACAATTCCCTGCGCTGCACTTCATCCGCTCTTTTCTGGTGGGAT
GCTTACTCGATTAACAGTTGGCCCAGCCAATCCCTCTCTCTGTTCCCCCC
CCCATGCCTTCCTCCCGACTTCTTTACTTCCCCCACCTCCCCCGGATTTT
CCTGGGCCTCGCCCCTCCCACCTATTCCTGGCTCTTTCCAAACCCCCACT
CCCAAAATCCGGATATCCCTCCN

Query= MSMg01no532_j12.b1 MSMg01no532_j12.b1 CHROMAT_FILE:
MSMg01no532_j12.b1 PHD_FILE: MSMg01no532_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:33 2005
         (641 letters)



>mm_chrX_65308411_65309451
          Length = 1041

 Score = 1149 bits (594), Expect = 0.0
 Identities = 627/638 (98%), Gaps = 2/638 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatagtattttatcatgaaacattaaaaattaaagccagtgtgctactaactct 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatagtaaattatcatgaaacattaaaaattaaagccagtgtgctactaactct 264

                                                                       
Query: 65  tcaatgtagttaaagagaaacaattaattgttgcataaattagttaagtagatataatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaatgtagttaaagagaaacaattaattgttgcataaattagttaagtagatataatac 324

                                                                       
Query: 125 taacatacaaatgagaaacactcagaaagatcaaagttgttattattcatactacttaat 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgacatacaaatgagaaacactcagaaagatcaaagttgttattattcatactacttaat 384

                                                                       
Query: 185 ttcaaatcaagcagatcaaagtttattggcagaaggggatggatagaaaaattctgataa 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 ttcaaatcaagcagatcaaagtttattggcagaaggggatggataggaaaattctgataa 444

                                                                       
Query: 245 ggattgtgagagtgcatattaatttttattgtcatgaaagtattgtgtagataaaaaaat 304
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 ggattgtgagaatgcatattaatttttattgtcatgaaagtattgtgtagataaaaaa-t 503

                                                                       
Query: 305 tgtcatggcatacattaaatatgattaatttatgattgcatgaacattatacaaaacaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtcatggcatacattaaatatgattaatttatgattgcatgaacattatacaaaacaag 563

                                                                       
Query: 365 aggaaataattatatattatacaaaactataaggaaataatcaatgaatttttttactag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 aggaaataattatatattatacaaaactataaggaaataatcaatgaatgtttttactag 623

                                                                       
Query: 425 caaactatttttaaaaggagaaacaaggtttatttacaaagttatttaaagtcagtcagg 484
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaaatatttttaaaaggagaaacaaggtttatttacaaagttatttaaagtcagtcagg 683

                                                                       
Query: 485 gtattatttcagattctccatttgtctctaaataaataaaaa-tagataatctccatatt 543
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 gtattatttcagattctccatttgtctctaaataaataaaaaatagataatctccatatt 743

                                                                       
Query: 544 aaagaaagatgaatgaaatgatattatacataaaaaacctttttcccatttacaaaagcc 603
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 744 aaagaaagatgaatgaaatgatattatacataaaaaaactttttcccatttacaaaagcc 803

                                                 
Query: 604 acactgaatacatgctagcaatttctgttttattttaa 641
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 804 acactgagtacatgctagcaatttctgttttattttaa 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)