XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAAT
ATACAGCTGAAAGTTAATCTTAACAAACTTTTTTACAGCACTAGAGATTG
AACCAATAGTTTTGCACTTGTTAGGAAGTACAAACCACTGAGCTATATCC
AAAGCCCAATATCAACAAACATTTTCTTAAGTCAAATTATGCCAGATTTT
TTTTCTAATACAAAGCACAACTAGAGAGCAAAAACAAAACAACAGCAGCA
GCAACAGTAGCAACAACAACAACAAAACAAATCATTGGAAAGTACACAAA
TACATGGAAATAAAGCAGCTTAATTTTCAACTACTAGTGGAACAAGAAAA
ACATCAAGTATTTTCTCCTTTAAAATTTCTTGAAACAAACTAAAAAGGGC
TTGGTCCTGGGCAAGGAAAACATCATGGTGGGTAAAATATTTGCTTTATA
AGCATCAGGACCTGAGTTCAGATCCTTAGCACTCACATAAATGCCAAGTG
GGACAGTGTATGTCTGTAACCCCAACACGCACGCACACACACAAACACAC
ACACACACACACAGAGAGTTGTACACAAACCACCACACAGAAAATAGAAA
AGAAAACGCCAAACGGGATAGGGTAAAGTCCATGAGCTTTCTTTCCGTTT
TGTTTTTTTTTTCCCCACATTCCTAGCTTTCACGATTTTGAAATTTTTTA
TTAGATATTGTTTATTTACATTTCAAATGATATCCCCTTTCCTAGTTTCC
CCTCCAAAAATCCCTATCCCATC

TGGGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTTAGCTCTGAACCCCATTTTTAATGGGGTTA
TTTGATTTTCTGGAGTCCACCTTTTTGAGTTCTTTATATATACTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAACTTTGC
AATTTTATGAGGTCCCATTTGTCGATTCTCGATCCTACAGCACAAGATAT
AGCTAGTTTCTTAAAAAACAATGGATACCCTCAATGGTTACATTCCATTC
AGGAATCAGTGCAGTTAGCTGAATGTTTTAACTGGTGTGTGTGTGTGTGT
GTGTGTGTGTGTNNGTGTGTGTGTGTGTNCANNCACNCACATGCATGCAC
ATGTGCATGTATGTCTGTGTTGGTGTATCTCTGTGTGTTCATCTTTGTGT
GTATAGAACAAGGAAAATGCTTTAAGCAGGATATATGAATGGTACATATT
ATTGTAAGTGAGTTCCTGGCAGTAAGATTAGAGGTATTTGTTGGTATTGT
GCACTGAATCATTGCTAACATGATAGTGTTTGGAAATGGGTCTGGTGTGT
CAAAAACTANATTGCCCAATAAAAATCCGGGAAAAAGACCCTTCTGGAAG
GGGATGTCCCTTTCTTCTCCTGGGGAATAAAATATGGCCGCCCACAATCC
TTATTTTCCTTAAAAATATTTTGGAAAAAAAACTACCATCTTA

Query= MSMg01no534_e18.b1 MSMg01no534_e18.b1 CHROMAT_FILE:
MSMg01no534_e18.b1 PHD_FILE: MSMg01no534_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:45 2005
         (707 letters)



>mm_chrX_153363894_153364997
          Length = 1104

 Score = 1299 bits (672), Expect = 0.0
 Identities = 696/706 (98%), Gaps = 5/706 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccaatatacagctgaaagttaatcttaacaaacttttttacagcactagaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctccaatatacagctgaaagttaatcttaacaaacttttttacagcactagaga 261

                                                                       
Query: 64  ttgaaccaatagttttgcacttgttaggaagtacaaaccactgagctatatccaaagccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgaaccaatagttttgcacttgttaggaagtacaaaccactgagctatatccaaagccc 321

                                                                       
Query: 124 aatatcaacaaacattttcttaagtcaaattatgccagattttttttctaatacaaagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 322 aatatcaacaaacattttcttaagtcaaattatgccagattttttttctaatacaaaaca 381

                                                                       
Query: 184 caactagagagcaaaaacaaaacaacagcagcagcaacagtagcaacaacaacaacaaaa 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caactagagagcataaacaaaacaacagcagcagcaacagtagcaacaacaacaacaaaa 441

                                                                       
Query: 244 caaatcattggaaagtacacaaatacatggaaataaagcagcttaattttcaactactag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caaatcattggaaagtacacaaatacatggaaataaagcagcttaattttcaactactag 501

                                                                       
Query: 304 tggaacaagaaaaacatcaagtattttctcctttaaaatttcttgaaacaaactaaaaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tggaacaagaaaaacatcaagtattttctcctttaaaatttcttgaaacaaactaaaaag 561

                                                                       
Query: 364 ggcttggtcctgggcaaggaaaacatcatggtgggtaaaatatttgctttataagcatca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggcttggtcctgggcaaggaaaacatcatggtgggtaaaatatttgctttataagcatca 621

                                                                       
Query: 424 ggacctgagttcagatccttagcactcacataaatgccaagtgggacagtgtatgtctgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ggacctgagttcagatccttagcactcacataaatgccaagtgggacagtgtatgtctgt 681

                                                                       
Query: 484 aaccccaacacgcacgcacacacacaaacacacacacacacacacaga--gagttgtaca 541
           |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||
Sbjct: 682 aaccccaacacgcacgcacacacacaaacacacacacacacacacacacagagttgtaca 741

                                                                       
Query: 542 caaaccaccacacagaaaatagaaaagaaaacgccaaacgggatagggtaaagtccatga 601
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 742 caaaccaccacacagaaaatggaaaagaaaacgccaaacgggatagggtaaagtccatga 801

                                                                       
Query: 602 gctttctttccgttttgttttttttttccccacattcctagctttcacgattttgaaatt 661
           ||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 802 gctttctttccgtttt---tttttttcccccacattcctagctttcacgattttgaaatt 858

                                                         
Query: 662 ttttattagatattgtttatttacatttcaaatgatatcccctttc 707
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ttttattagatattgtttatttacatttcaaatgatatcccctttc 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1104
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1094
Effective search space:   762518
Effective search space used:   762518
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)