BAC Information

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BAC

Clone NameMSMg01-536E22
ChromosomeX (Build37)
Map Location 43,487,526 - 43,595,592
singlet/doubletdoublet
Overlap geneLOC100040075
Upstream geneLOC100040038, EG385346
Downstream geneActrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536E22.T7 (MSMg01no536_e22.b1)MSMg01-536E22.TJ (MSMg01no536_e22.g1)
ACCAG603552AG603553
length767773
length of high quality
(start - end)		559 (55 - 613)544 (83 - 626)
definitionCHROMAT_FILE: MSMg01no536_e22.b1 PHD_FILE: MSMg01no536_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:22 2005CHROMAT_FILE: MSMg01no536_e22.g1 PHD_FILE: MSMg01no536_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,595,038 - 43,595,592)(43,487,526 - 43,488,069)
sequence
GTTATTTAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGCAAACTTCGATGATGGTTGGGTAAGGGAAACTAA
CTTATGTGGTTTAGGTCTAATGAAGGTAGGTGGAGAGGTTGTGGGAGAAG
AACAATGAAATTATTTTATGATTTGGACTTACCACAAAAGGAGGAATTAT
TACTGTGTCACAGGATTAGGAAGGTGGAGAACCAGTATTGTAAAGGGTAT
CATCACCTCCTTTCTGCAATCAAGAATAATTTCAACTTTTTTTTCTATGA
ATTCAAATACAACATTCATTGAAAGCACTACCACTGACATGTTTTCTTGA
TGAGGTACAATGCCCCCAAATAAATTTTGATCCAAGAAGTATCTCTTTAA
CTTTAAAATGTTATCAGCTTTCAAAACTTAGCATCCACGGAAATGAGAAT
TTCCCATGCCAAAGTATTTTAATCACTTCTTTTCATTTGCTCTTAGCTCC
TTCACCCATCTCTTAATTTTTGCAATCACTCTATAAAATTACAATTCAAA
ATAATAGAATATTTCTTTGCATGCAACTATATATAATTAAATAAAATGAC
AAAATTATGTTTCAATTGTATCTTCAGTGTCAGCGATTAATTTTATTGTC
CTATTTTACATTCATACACTCTCAAATGGCTATGTTATATTTTTTCTCAC
TTCTGGCTATCCCCAATGTTTCTAATGTTATTCTATCAACGATATATTTT
CTGCGTACTGCATTGTG

NTTTTTTCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTATTCTGGTTTTTA
CACTGTTTCTACCACCATTTTCTGATGCTCGGCAAACCATAGATACAGGA
GCTATGATGTAAATATGCCTGTTGGGGCTATGCTCCACAGTTTGCATTGA
TACTTGCATTGCATCTAGTTGTAGTTTTCTGTGATGATCTTCATTTTCAG
TAAAGAGAAGATGATTTGATGAGGGGTAGTACCTACATTTATCTGTGGGT
ATAAGGATAAGGTTTAGAACATAGTAACCAAGAGTGTGTAAAGGAACTAT
GTACAGAGGGGCTTTAGAGGGGAAAAATAACAGATCACAGGTGACATAAA
TTAAAAAATAAAAGTGAAGAAAATAGGGGGAGCTCTATCTGGGTATAAAA
AACAGAGGTCAATACATTAGAAAGAAGAACAAGGGACAAGGAAAATAATG
GGCGATTAATATTTTATGTGTATGTGAAATTACACAAAACACATATGTAT
GCTTATACACATTCTCACACACACTGAAGGCATATATGTGTATGTACACC
CNGAGAGACAGACAAACAGACAGACACACACACACAAAGGGAAGTTAAGT
CACTTAAACAACAATGCTCCCCACCAGTACCACAGACTAAACAAAACCCA
GTGGCAGAAGAAACACACTCCTTCCCATGGGTGTTCATCCCTCCCGGTTG
AAGTGGGGACTATTGCTGAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_e22.b1 MSMg01no536_e22.b1 CHROMAT_FILE:
MSMg01no536_e22.b1 PHD_FILE: MSMg01no536_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:22 2005
         (559 letters)



>mm_chrX_43594658_43595616
          Length = 959

 Score = 1035 bits (535), Expect = 0.0
 Identities = 550/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcaaacttcgatgatggttgggtaagggaaactaacttatgtggtttaggtct 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 935 gaattcagcaaacagggatgatggttgggtaagggaaactaacttatgtggttcaggtct 876

                                                                       
Query: 65  aatgaaggtaggtggagaggttgtgggagaagaacaatgaaattattttatgatttggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aatgaaggtaggtggagaggttgtgggagaagaacaatgaaattattttatgatttggac 816

                                                                       
Query: 125 ttaccacaaaaggaggaattattactgtgtcacaggattaggaaggtggagaaccagtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttaccacaaaaggaggaattattactgtgtcacaggattaggaaggtggagaaccagtat 756

                                                                       
Query: 185 tgtaaagggtatcatcacctcctttctgcaatcaagaataatttcaacttttttttctat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgtaaagggtatcatcacctcctttctgcaatcaagaataatttcaacttttttttctat 696

                                                                       
Query: 245 gaattcaaatacaacattcattgaaagcactaccactgacatgttttcttgatgaggtac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gaattcaaatacaacattcattgaaagcactaccactgacatgttttcttgatgaggtac 636

                                                                       
Query: 305 aatgcccccaaataaattttgatccaagaagtatctctttaactttaaaatgttatcagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aatgcccccaaataaattttgatccaagaagtatctctttaactttaaaatgttatcagc 576

                                                                       
Query: 365 tttcaaaacttagcatccacggaaatgagaatttcccatgccaaagtattttaatcactt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttcaaaacttagcatccacggaaatgagaatttcccatgccaaagtattttaatcactt 516

                                                                       
Query: 425 cttttcatttgctcttagctccttcacccatctcttaatttttgcaatcactctataaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cttttcatttgctcttagctccttcacccatctcttaatttttgcaatcactctataaaa 456

                                                                       
Query: 485 ttacaattcaaaataatagaatatttctttgcatgcaactatatataattaaataaaatg 544
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttacaattcaaaataatggaatatttctttgcatgcaactatatataattaaataaaatg 396

                          
Query: 545 acaaaattatgtttc 559
           |||||||||||||||
Sbjct: 395 acaaaattatgtttc 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no536_e22.g1 MSMg01no536_e22.g1 CHROMAT_FILE:
MSMg01no536_e22.g1 PHD_FILE: MSMg01no536_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:22 2005
         (544 letters)



>mm_chrX_43487326_43488269
          Length = 944

 Score = 1023 bits (529), Expect = 0.0
 Identities = 540/544 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctattctggtttttacactgtttctaccaccattttctgatgctcggcaaaccatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttcctattctggtttttacactgtttctaccaccattttctgatgctcgacaaaccatag 260

                                                                       
Query: 61  atacaggagctatgatgtaaatatgcctgttggggctatgctccacagtttgcattgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacaggagctatgatgtaaatatgcctgttggggctatgctccacagtttgcattgata 320

                                                                       
Query: 121 cttgcattgcatctagttgtagttttctgtgatgatcttcattttcagtaaagagaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgcattgcatctagttgtagttttctgtgatgatcttcattttcagtaaagagaagat 380

                                                                       
Query: 181 gatttgatgaggggtagtacctacatttatctgtgggtataaggataaggtttagaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttgatgaggggtagtacctacatttatctgtgggtataaggataaggtttagaacat 440

                                                                       
Query: 241 agtaaccaagagtgtgtaaaggaactatgtacagaggggctttagaggggaaaaataaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaaccaagagtgtgtaaaggaactatgtacagaggggctttagaggggaaaaataaca 500

                                                                       
Query: 301 gatcacaggtgacataaattaaaaaataaaagtgaagaaaatagggggagctctatctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatcacaggtgacataaattaaaaaataaaagtgaagaaaatagggggagctctatctgg 560

                                                                       
Query: 361 gtataaaaaacagaggtcaatacattagaaagaagaacaagggacaaggaaaataatggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 gtataaaaaacagaggtcaatacattagaaagaagaacaagggacaaggaaaataatggt 620

                                                                       
Query: 421 cgattaatattttatgtgtatgtgaaattacacaaaacacatatgtatgcttatacacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgattaatattttatgtgtatgtgaaattacacaaaacacatatgtatgcttatacacat 680

                                                                       
Query: 481 tctcacacacactgaaggcatatatgtgtatgtacacccngagagacagacaaacagaca 540
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 681 tctcacacacactgaaggcatatatgtgtatgtacacacagagagacagacaaacagaca 740

               
Query: 541 gaca 544
           ||||
Sbjct: 741 gaca 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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