XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
TGACAAAATAAAAATATTTCTTTAGCACTGATTACTCAGGATAGAATTGA
TAGAGATTTAACAGAATCTGATTTGGAGGAAGCTATCCTTTACATAGGAA
CTCAGGTTCAAATTATTAGAACATACTTAACTACCTCATGTCATGCCAAT
TATAAGTGGATTTGTGTCACCCATTTGCCCTACAATGGGTCATAAACATC
CTGGAAACAGATATAAGCACATCTGTATGGTTTGTGGAACAATTCAAAAC
TCACTACTGATATGGATATTTTATATTTCAAGAGCAGTGCCACCAGCCAC
TCCAGAATGAAGAGTTCTTCAGCAGCAGAATTAGATTATTTTTCAAATTC
AATCATATATTTTCTTAATTCTATATGGAATTTTCTTATAAATTTGGGAG
TTATTATAGGATTAGTTATTCTGCTTCTGTTTCTTCTTCCAGTCATCTTT
AAGTGTTTAGAGTGTGCTATCGGGATTGCTCAAAGGGAGATATATATGCT
TCATTTATATTATTCAAAGGGAAGAGATGTCAGGAGCCATAATGGAACAG
GCTACTTACTAGTTAGTTAACATTCTGAGATAGCCTGCTTCAGATTGTTA
TATAATCTGTGACAGGTTCACCCTTATTAAGCAAGGCTGTAAGGAATTCA
ATTTAAGAAACATTACTGCTAATTAATATGTTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCA
CCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCAAGGATGTGGGGAAAGAGGAACACTTG
TCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTAGAAATCAGTC
TGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGAATCCCACAAA
ACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACA
CATGCTCGACAATGTTCATAGCAGCCTTATTTATAACAGCCAGAAGCTGA
TAAGAACACAGATGCCCCTCAACAGAGGAATGGATAAAGAAAATGTGGTA
CATTTACACAATGGAGTACTACTCAGTTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGGCCTGGAGGGCATCATCCTGAGTGAGGTA
ACCCAATCACGAAAGAACTCACACAATATGTACTCACTGATAAGTGGGTA
TTAACCCAAAAACTTAGAATATCCAAGATATAAGATACAATTTGCTAAAC
ACATGTAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTT

Query= MSMg01no538_i09.b1 MSMg01no538_i09.b1 CHROMAT_FILE:
MSMg01no538_i09.b1 PHD_FILE: MSMg01no538_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:12 2005
         (695 letters)



>mm_chrX_60689712_60690807
          Length = 1096

 Score = 1305 bits (675), Expect = 0.0
 Identities = 687/691 (99%), Gaps = 3/691 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattccttgacaaaa-taaaaatatttctttagcactgattactcaggatagaattgata 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattccttgacaaaaataaaaatatttctttagcactgattactcaggatagaattgata 265

                                                                       
Query: 65  gagatttaacagaatctgatttggaggaagctatcctttacataggaactcaggttcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagatttaacagaatctgatttggaggaagctatcctttacataggaactcaggttcaaa 325

                                                                       
Query: 125 ttattagaacatacttaactacctcatgtcatgccaattataagtggatttgtgtcaccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttattagaacatacttaactacctcatgtcatgccaattataagtggatttgtgtcaccc 385

                                                                       
Query: 185 atttgccctacaatgggtcataaacatcctggaaacagatataagcacatctgtatggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atttgccctacaatgggtcataaacatcctggaaacagatataagcacatctgtatggtt 445

                                                                       
Query: 245 tgtggaacaattcaaaactcactactgatatggatattttatatttcaagagcagtgcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtggaacaattcaaaactcactactgatatggatattttatatttcaagagcagtgcca 505

                                                                       
Query: 305 ccagccactccagaatgaagagttcttcagcagcagaattagattatttttcaaattcaa 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccagtcactccagaatgaagagttcttcagcagcagaattagattatttttcaaattcaa 565

                                                                       
Query: 365 tcatatattttcttaattctatatggaattttcttataaatttgggagttattataggat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcatatattttcttaattctatatggaattttcttataaatttgggagttattataggat 625

                                                                       
Query: 425 tagttattctgcttctgtttcttcttccagtcatctttaagtgtttagagtgtgctatc- 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 626 tagttattctgcttctgtttcttcttccagtcatctttaagtgtttagagtgtgcta-ct 684

                                                                       
Query: 484 gggattgctcaaagggagatatatatgcttcatttatattattcaaagggaagagatgtc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggattgctcaaagggagatatatatgcttcatttatattattcaaagggaagagatgtc 744

                                                                       
Query: 544 aggagccataatggaacaggctacttactagttagttaacattctgagatagcctgcttc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggagccataatggaacaggctacttactagttagttaacattctgagatagcctgcttc 804

                                                                       
Query: 604 agattgttatataatctgtgacaggttcacccttattaagcaaggctgtaaggaattcaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agattgttatataatctgtgacaggttcacccttattaagcaaggctgtaaggaattcaa 864

                                          
Query: 664 tttaagaaacattactgctaattaatatgtt 694
           |||||||||||||||||||||||||||||||
Sbjct: 865 tttaagaaacattactgctaattaatatgtt 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1096
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1086
Effective search space:   743910
Effective search space used:   743910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)