XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTTT
TCATGAGTCCCCACCTAGGAGAAGCAGCTGGGGGGCAGCAGCCTGTATCC
TGACACTTTATTAAAATGATGCTGCTTCCTGTAAAACTGATAGCTGGATT
CTAAGTGCTACCAGCCAGGAAGGACTGTTTTCTTATGACCTCAGCCTTCT
TTGGATGAGAAAAATTCATAGCCTTTTTCCATTTTCTGTAAGCTTGTTGT
GTTAGGTACTCTGTTCTGCTCAGTGGATCAAGTGACTCTCGAGAGTTGTC
ATGGTAAACTGGTCAAGATTGTGGTTCTGGCATGGCTATCCTCCTTCACT
TAGACAATGTCTCTTACAATGCTCATGTTTGTATGGGCAGCTTCAAAACG
TGCTGACCGTTTTATAGGAAGGTAGCTCAGTAGCATAGCTTTGCTACTTC
AAGGGTGGCCTGTAAATCAGTGATACTGACTTTACTCAGGAAGTCCACTA
CAAAAGCAGAACCTGGGCTGAGATTATAGTTCATCAGAAAGGTGTTCGCC
TAGCACAAACATAGCCCTGGATTAGAAATCCAGTATGGGAATAAAAAAGA
TACAAGAAAGAAAAAGAAATGCAGAATATCAACCCCCACGGTAGGCTTTG
TAAGTTGTTAACAGTATCTGTGAAGCGTTGAGCATTACAGTGGCAGAAGG
CACTGGGATAGGACAGTGACCCAGAAAGGCTTTCCCTTTTTCTCATTGCC
A

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATTATGTGTGCCCACTAGGGGTTACCAGTAAAATGTG
TTTCTAGGTATTAGAAACTGACATTTAGGAATGGAAATGAGATAAAAGGG
GGCTGAGGAGTACAGGAATGAGGAAAGCAGGATGTTCCCCTGGGATCTGC
TTACTCCCCTGGGAATGGGAGCAGCAAATGAGGGGAGGTCACAGTAGGTA
CTCTGCTACAGAGCTGTGGTTAAGACCCAGGAATTAGATGCGGGGGAAGA
GGAGGGAAAGTGAAGATCTGACACTCGCCTACCATCTTCTTTGACCTACT
TGCTTTTCTGGCAGGGTTCATTGGCACTCAGAGAGTGCCTGCTGGAGTTT
GAGGCTAGGACAACCAAATGAATGGGGAGGGATGTCAGAGGAGAAGATCT
GTGTGATCCATGGAGATAGGGGGCAGAGAAAAGGGGAGGCTACAGCAGCT
GCTGAGATTGGGGTATTAGATTTAGAGGAGTGGAGGGNAGAGGTGAANGT
TTTNTNNNNNNNNNNNNNNNTNNNNNNTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTNTTTTTTT
GTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTNTTTGTTTG
TGTGTTGTTTTTTGTGTNTTGTTTTTGTTTTTTTTTTGTTTTGTTGGTGT
TGTTGTGTT

Query= MSMg01no538_m20.b1 MSMg01no538_m20.b1 CHROMAT_FILE:
MSMg01no538_m20.b1 PHD_FILE: MSMg01no538_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:32 2005
         (660 letters)



>mm_chrX_140017898_140018957
          Length = 1060

 Score = 1135 bits (587), Expect = 0.0
 Identities = 629/657 (95%), Gaps = 22/657 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtttttcatgagtccccacctaggagaagcagctggggggcagcagcctgta 63
           |||||||||||| | |||||||||||||||||||||||||                    
Sbjct: 900 ggaattctgtttctaatgagtccccacctaggagaagcag-------------------- 861

                                                                       
Query: 64  tcctgacactttattaaaatgatgctgcttcctgtaaaactgatagctggattctaagtg 123
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 --ctgacactttattaaaatgatgctgcttcctgtaaaactgatagctggattctaagtg 803

                                                                       
Query: 124 ctaccagccaggaaggactgttttcttatgacctcagccttctttggatgagaaaaattc 183
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 802 ctaccagccaggaaggactgttttcttatgacctcggccttctttggatgagaaaaattc 743

                                                                       
Query: 184 atagcctttttccattttctgtaagcttgttgtgttaggtactctgttctgctcagtgga 243
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atagcatttttccattttctgtaagcttgttgtgttaggtactctgttctgctcagtgga 683

                                                                       
Query: 244 tcaagtgactctcgagagttgtcatggtaaactggtcaagattgtggttctggcatggct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcaagtgactctcgagagttgtcatggtaaactggtcaagattgtggttctggcatggct 623

                                                                       
Query: 304 atcctccttcacttagacaatgtctcttacaatgctcatgtttgtatgggcagcttcaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atcctccttcacttagacaatgtctcttacaatgctcatgtttgtatgggcagcttcaaa 563

                                                                       
Query: 364 acgtgctgaccgttttataggaaggtagctcagtagcatagctttgctacttcaagggtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acgtgctgaccgttttataggaaggtagctcagtagcatagctttgctacttcaagggtg 503

                                                                       
Query: 424 gcctgtaaatcagtgatactgactttactcaggaagtccactacaaaagcagaacctggg 483
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcctgtaaatcagtgatactggctttactcaggaagtccactacaaaagcagaacctggg 443

                                                                       
Query: 484 ctgagattatagttcatcagaaaggtgttcgcctagcacaaacatagccctggattagaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgagattatagttcatcagaaaggtgttcgcctagcacaaacatagccctggattagaa 383

                                                                       
Query: 544 atccagtatgggaataaaaaagatacaagaaagaaaaagaaatgcagaatatcaaccccc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atccagtatgggaataaaaaagatacaagaaagaaaaagaaatgcagaatatcaaccccc 323

                                                                    
Query: 604 acggtaggctttgtaagttgttaacagtatctgtgaagcgttgagcattacagtggc 660
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 322 acggtaggctttgtaagttgttaacagtatctgtgaagctttgagcattacagtggc 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)