NAAATAAATTAAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTATATCTCCCAAGGGATCTAGCACCTTTGAAGTCT
ACCAAATTTTCATATCTGTTGAGGCATGTCTAGGCCTTTCACTATATGCT
CAACAGTCTATCCAGCAGTCATCATCTTCCCAAAAGATTCTGGGAACATC
AGAGTGTGCCAAGTGTATTCATTAACATTTTTCTTTCGTCTCAGGTTCTT
TGGGAATGTATTCATGTGTCCTATGGATGACAGGAACATTGCTACAAGTC
CCAAAGCCTATTGGACATTCCTCACCAATACAAGCATGTCAATCCCCTCC
ACCATCTATGAAAAGAAACTGTGACAACTTGTATTCACAAGCAACTCTTG
TAGCATAAATCTCTCCATTGTTCTCACCATCTACTCAGGTGAATGGACAA
GCTTACCTCAATCAAGAATCTACTTTGGGACAGCCCATAGCTGCCCAGGG
AGTTCAACAACTTTTGTTGTCCAGCCCAGGTTATAAAGAAAGTGACAAGC
AGGAAATAGGAATTTTTCCATCTTACCAAGTACTTCTGGGAATTTCCTTA
CCTGCAGAGGGAATGGTAGGATCATGACCATCTGTACAAAGGGTTCTGGG
AACTTCTCTATCTGTCCAAGAGTCTCTGTTCACACCCAAACAAGAAACTG
TAGGTACTCTGCATCTCTAACAAAGCN

GGGCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAAGCCCATGGAAACGGA
ATAGTTCAATGTGCTCATCAGACCTTAAAGAATTGGCCTTTTATGACAAA
ACAGTGGCAGTTATATCCCCCAAGGTCACCAAAGGCGCATCTTGCCTTTA
CTTTATTTGATCTAAATTTTTTGCAAACTGATATTAAAGGTCAGTCTGCA
GCAGATCACCACTGGCATCCAGTTACTTCTAATTCTTATGCATTGATAAA
ATGAAAGGACACACTAACTAAGGAATGTAAGGGTCCAGATCCGATTCGAA
TCTGGGGAAGGAGCTCGGTTTGCGTTTTTTCATGTGAAGATGGAGCACAG
AGGCTGCCCAAGAGATTAATTTGTTAGCTGAACACAGATCCTGAATCTTC
TTATAAGTATCACTCTGAGAACTAAAATTCCTCTTTTGCATAGAATTTAG
TTGGGGACTCATCCTCCCAGAAAAGCTGTTTTCTTGCTACTCTCAGAGCT
TTGCAATTTGCAACTGAATAAAGTATCTGGACTTCCCCAAAAGAAGCTTT
GCATTGCTACTTTCTCATTGTCTGGGTCTCTTTTTCTTAAGCAGGTCAAT
CAACATCCTCCAATCAGACTGCAGGGGGAGTGCATCCCTGCAAACAAAGG
CTTAAGGTGGCAACTGCTATTTTCATTCTAAAGACATTCTACCAT

Query= MSMg01no539_e01.b1 MSMg01no539_e01.b1 CHROMAT_FILE:
MSMg01no539_e01.b1 PHD_FILE: MSMg01no539_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:08 2005
         (615 letters)



>mm_chrX_143699219_143700233
          Length = 1015

 Score =  337 bits (174), Expect = 2e-96
 Identities = 493/620 (79%), Gaps = 58/620 (9%)
 Strand = Plus / Plus

                                                                       
Query: 22  caagggatctagcacctttg--aagtctaccaaa-ttttcatatctgttgaggcatgtct 78
           ||||||||||| ||| ||||  |  ||||||||| ||||| |||||||| |||||  |||
Sbjct: 196 caagggatctatcacatttgcta--tctaccaaacttttcgtatctgttcaggcaactct 253

                                                                       
Query: 79  aggcct---ttcactatatgctcaacagtctatccagcagtcatcatcttccc-aaaaga 134
            || ||   |||| || |  ||||||||||||||||||||||||||||||||  ||||||
Sbjct: 254 gggtctgtcttca-taca--ctcaacagtctatccagcagtcatcatcttcctgaaaaga 310

                                                                       
Query: 135 ttctgggaacatc-agagtgtgccaagtgtattcattaacatttttctttcgtctcaggt 193
           ||||||||||||| | | | | || |||||| |||| ||||||| ||||| |||||||| 
Sbjct: 311 ttctgggaacatcca-acttttcccagtgtactcataaacatttgtctttggtctcagga 369

                                                                       
Query: 194 tctttgggaatgtattcatgtgt-cctatgga-tgacaggaacattgctacaagtcccaa 251
           ||||| ||||||| ||||||||| || | | | || |||||||||||| ||| | |||||
Sbjct: 370 tctttaggaatgtcttcatgtgtgccaaag-actg-caggaacattgccacatgccccaa 427

                                                                       
Query: 252 agcctattggacattcctcaccaatacaagcatgtcaatcccctccaccatctatg--aa 309
           ||||| || | ||||||||||||| ||||||| |||||||||||||||||||| ||  ||
Sbjct: 428 agcctcttagccattcctcaccaacacaagcaagtcaatcccctccaccatctttgcaaa 487

                                                                       
Query: 310 aagaaactgtgacaact----tgtattcacaagcaactcttg---t-a--gcat------ 353
           |||   ||||| ||| |    ||||| |||||||||||||||   | |  ||||      
Sbjct: 488 aag---ctgtggcaaatgccctgtatccacaagcaactcttgagctgaatgcatcagcac 544

                                                                       
Query: 354 aaatctctccattgttctcaccatctactcaggtgaatggacaagcttacctcaat-caa 412
           |||| | | ||||   |||||||||||||||||||  ||||||||| | ||| ||| || 
Sbjct: 545 aaattttttcattacactcaccatctactcaggtgcctggacaagcctcccttaatgca- 603

                                                                       
Query: 413 gaatctactttgggacagcccatagctgcccagggagttcaacaacttttg--ttgtcca 470
           ||| | |||||||||||| |||||||||| | ||||||| || ||||||||  ||  | |
Sbjct: 604 gaaaccactttgggacagaccatagctgcacggggagttgaagaacttttgcctt--caa 661

                                                                       
Query: 471 gcccagg---------ttataaagaaagtgacaagcaggaaataggaatttttccatctt 521
            ||||||         ||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 662 acccagggactctaggttataaagaaagtgacaagcaggaactaggaatttttccatctg 721

                                                                       
Query: 522 accaagtacttctgggaatttccttacctgcagagggaa--tggtaggatcatgaccatc 579
            |||||| | |||||||||||| ||||||| ||| ||||  |  ||||||| ||  ||| 
Sbjct: 722 cccaagtgcctctgggaatttctttacctgtagaaggaactt--taggatcttggtcatt 779

                               
Query: 580 tgtacaaagggttctgggaa 599
           || |||| ||||||||||||
Sbjct: 780 tgcacaaggggttctgggaa 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)