Query= MSMg01no540_i20.b1 MSMg01no540_i20.b1 CHROMAT_FILE:
MSMg01no540_i20.b1 PHD_FILE: MSMg01no540_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:51 2005
(690 letters)
>mm_chrX_118817057_118818146
Length = 1090
Score = 1266 bits (655), Expect = 0.0
Identities = 676/683 (98%)
Strand = Plus / Plus
Query: 5 gaattctctagtagcaaatgtgctttctatggaaatatacctatgacattatagtggcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctagtagcaaatgtgctttctatggaaatatacctatgacattatagtggcta 264
Query: 65 taataacaataaaaattaaaagactccaaatcatattcacctaagtacaagagagtacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taataacaataaaaattaaaagactccaaatcatattcacctaagtacaagagagtacag 324
Query: 125 acacctaagtacaagtacaataatcatttaaatatttatttgtgacatatttaattcaca 184
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 325 acacctaagtacaagtacaataatcgtttaaatagttatttgtgacatatttaattcaca 384
Query: 185 attgcttttgtacttctagagtagtttttattcctgtttcatttttagaaaggaaacatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgcttttgtacttctagagtagtttttattcctgtttcatttttagaaaggaaacatg 444
Query: 245 aattaataatatcctctatccttatcctaattgggtgatcatatctagttattaataaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattaataatatcctctatccttatcctaattgggtgatcatatctagttattaataaaa 504
Query: 305 tcaattcttcacacaactcaaaaaattaaaaataaattaactggagaaaaattgacaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaattcttcacacaactcaaaaaattaaaaataaattaactggagaaaaattgacaaaa 564
Query: 365 gtttagtgttcacaagaaaatataggcaaactgattcctatattctattattgtcaaaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttagtgttcacaagaaaatataggcaaactgattcctatattctattattgtcaaaag 624
Query: 425 tccatataaattagttttcctaccatgcaatcaaaatttaaaagaggtaaaccaacagta 484
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 tccatataaattagtattcctaccatgcaatcaaaatttaacagaggtaaaccaacagta 684
Query: 485 gatttgtgtcagtaaaacagagatttgagaccatttctgaacaactatgttaaaataact 544
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 catttgtgtcagtaatacagagatttgagaccatttctgaacaactaggttaaaataact 744
Query: 545 atgttaaaataatactctgtatatagatgatataaggaaactaattaataattcacttta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgttaaaataatactctgtatatagatgatataaggaaactaattaataattcacttta 804
Query: 605 aaacgttttaacaacagtgctgaaagagtatgtgaaaaatttagttccaataccttagtt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaacgttttaacaacagtgctgaaagagtatgtgaaaaatttagttccaataccttagtt 864
Query: 665 tcaagttcacagttttcagtaaa 687
|||||||||||||||||||||||
Sbjct: 865 tcaagttcacagttttcagtaaa 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_i20.g1 MSMg01no540_i20.g1 CHROMAT_FILE:
MSMg01no540_i20.g1 PHD_FILE: MSMg01no540_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:52 2005
(661 letters)
>mm_chr14_15254489_15255552
Length = 1064
Score = 580 bits (300), Expect = e-169
Identities = 570/670 (85%), Gaps = 33/670 (4%)
Strand = Plus / Plus
Query: 4 aatcacacccacagaga-ttttgtaggaaaaacagccatcagtttccttaccaaagaact 62
||||||| ||| |||| |||||||||||||||||||||| |||||||||||| |||| |
Sbjct: 208 aatcacaagcacggagatttttgtaggaaaaacagccatcggtttccttaccatagaagt 267
Query: 63 tgagaagctgttggtccctttaatagcagcatttaca---agc-cctca-cagggcatct 117
|||||||||| |||||||||||| || |||||||| | ||| ||| | |||| | |||
Sbjct: 268 tgagaagctgctggtccctttaagagtagcatttataatcagctcct-agcaggacttct 326
Query: 118 ccagccacactagactcctaaatacaagtgcagggctacaaagaccaactgatactattt 177
||||||||||| |||| |||| |||| |||||||||| ||||| |||| ||||||| |
Sbjct: 327 ccagccacactggacttctaactacaggtgcagggctccaaaggccaattgatactgtcg 386
Query: 178 attttttctttctctcttt-caccaaattatctgcagatagttggggaggactgcacttc 236
||||||| ||| |||||||||||| |||||| |||| ||| ||||| |||
Sbjct: 387 atttttt---------tttgcaccaaattatccccagataattggagagtactgcttttc 437
Query: 237 tcaaacccgttctctcatgtataaactatctcaagtcagggtataaagcacctatgagaa 296
|||||||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||
Sbjct: 438 tcaaacccgttctctcatgtgtaaactatctctagtcagggtacaaagcaccaatgagaa 497
Query: 297 ttaccttcaattctctagatttttcacgtagctctaaacacatacacaaaaacacacaaa 356
||||| ||| ||||||| | ||||||| |||||||||| |||||||||||||||||||||
Sbjct: 498 ttaccgtcacttctcta-aattttcacatagctctaaagacatacacaaaaacacacaaa 556
Query: 357 acataaaccaacagatccagacacacag-gaccctttctcatcctccaccagcaggcaaa 415
||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct: 557 acagaaaccaacagatccagacaca-tgtgaccctttctcatcctccacaagcaggcaaa 615
Query: 416 acaattagacgatttctgaggtggaagctcccacttca-acaatagaacttggttcctct 474
||||||||||||||||||||| ||||||| | ||||| | || |||||| || |||||
Sbjct: 616 acaattagacgatttctgagggggaagcttctgcttcata-aacagaactcagtccctct 674
Query: 475 gactgatcaccggagactaccaggtgtccctggctctccccacttctcagggcatccacc 534
|||||||| ||||| |||||||||||||||||| |||||| ||||| |||||| ||| ||
Sbjct: 675 gactgatctccggatactaccaggtgtccctggatctccctacttcccagggcgtccccc 734
Query: 535 agggtggcag--tgtgtggtcctcctagcatgtctgctgaccacagttctctggtcctta 592
|||| |||| ||| |||||||||||||||||||||| | |||||| ||| ||||||||
Sbjct: 735 agggcagcagcctgt-tggtcctcctagcatgtctgctaaacacagtcctccggtcctta 793
Query: 593 tggcccaaaaggacagctgcaaatataaagc----gtgcatttcagaaaaccccatct-t 647
|||||||| || ||||||||||||| ||||| ||| || ||||||||||||| | |
Sbjct: 794 tggcccaagagtacagctgcaaatacaaagcatacgtg--ttacagaaaaccccat-tgt 850
Query: 648 ctataaacac 657
||| ||||||
Sbjct: 851 ctacaaacac 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1064
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1054
Effective search space: 686154
Effective search space used: 686154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
