NNNTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTCTTTTTCATAGCTGAGTAGTACTCCATTGTGTAAA
TGTACCACATTTTTTTTTATCCATTCCTCTGTTCAGGGGCATCTGGGTTC
TTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGC
ATGTTTCTTTCTTACTAGTTGGAACATCTTCTGGATATATGCCCAGGAGA
GGTATTGTGGGATCCTCCAGTAGTACCATGTCCAATTTTCTTAGAAACTG
CCAGACTGATATCCAGAGTGGTAGTACAAGCTTGCAATCCCACCAACAAT
GGAGGAGTGTTCCTCTTTCTCCACATCCTCAGCAGCATCTGCTGTCACCT
GAATTTTTAATCTTAGCCATTCTGACTGGTGTGGGATGGAATCTCAGGGT
TGTTTTGATTTGCATTTCCCTGATGATTGAGGATGCTGAACATCTTTTCA
GGTGTTTCTCAGCCATTCGGTATTCCTCAGGTAAGAATTCTTTGTTTAGC
TCTGAGCCCCATTTTTTTAATGGGGTTATTTGATTTTTTGGAGTCCACCT
TCTTAAGTTCACTATATATATTGGATATTAGTCCTCTATCTGATTTAGGA
TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTGTTTTATTGACG
GTGTCTTTTACCTTACAGAAGCTTTGCAGGTTTATGAAAGTCCATTTATC
CATTCTCGATCN

NNNTTCCTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCATCACTTCCTGAAGA
AGCATGTGGAAAGTATGAATCTGCTCACATGCATAGCAAATGATTAAAGA
ATGTAGGTTGACATTGCTCAATTAGAGAGCCTAAGACATGTGTGTGAGGA
GATGGTGGAAAAAATGCTGGAAAGAACACTGGTATGTTGGTCAGAAAAAT
CTCCTATGAGTGGCCATGTAGACTAACAGTGATTGCATCTTTGTAGCCTC
AGTTCCTACATCATTAACAATGAGATAATAGCTACATCATCAGTCTGGGG
ATGTAGTTCAGTTACAAAACACTTCTCTGTTGTACTCAATATCTGGGGTC
CCATCTCCAGCACTGACAAAAACAAACAAACAAACAAACAACCCACAGCT
ACACCAAGTTCAGAATTAAATGGTATATCTCACCTATAGATTGAAACCTA
GTGGCTCTTCAATAAATAAATGCAAATCAGTGTCACCAGGAAATCCCTGT
ATATAAGTGACTAATGCACTAAATAAAAAAAAATCTGAAGAATAAAAATT
TAGTTGAATTGCAACAAATAGTAAAATGAGCAACAAATATTTACTGGAAA
ACTACTGTCTTCCAGGTGATTTGTTAAGTGCTGCAAAGTATCCTTATTTA
ATATTATTAACAACCAATAATGTAGATAATTATTATCGTGATGTTATATT
TTTAAAAACTA

Query= MSMg01no541_p07.g1 MSMg01no541_p07.g1 CHROMAT_FILE:
MSMg01no541_p07.g1 PHD_FILE: MSMg01no541_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:49 2005
         (679 letters)



>mm_chrX_18454274_18455353
          Length = 1080

 Score = 1245 bits (644), Expect = 0.0
 Identities = 650/652 (99%), Gaps = 1/652 (0%)
 Strand = Plus / Minus

                                                                        
Query: 29   aagtatgaatctgctcacatgcatagcaaatgattaaagaatgtaggttgacattgctca 88
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 aagtatgaatctgctcacatgcatagcaaatgattaaagaatgtaggttgacattgctca 1021

                                                                        
Query: 89   attagagagcctaagacatgtgtgtgaggagatggtggaaaaaatgctggaaagaacact 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 attagagagcctaagacatgtgtgtgaggagatggtggaaaaaatgctggaaagaacact 961

                                                                        
Query: 149  ggtatgttggtcagaaaaatctcctatgagtggccatgtagactaacagtgattgcatct 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  ggtatgttggtcagaaaaatctcctatgagtggccatgtagactaacagtgattgcatct 901

                                                                        
Query: 209  ttgtagcctcagttcctacatcattaacaatgagataatagctacatcatcagtctgggg 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  ttgtagcctcagttcctacatcattaacaatgagataatagctacatcatcagtctgggg 841

                                                                        
Query: 269  atgtagttcagttacaaaacacttctctgttgtactcaatatctggggtcccatctccag 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  atgtagttcagttacaaaacacttctctgttgtactcaatatctggggtcccatctccag 781

                                                                        
Query: 329  cactgacaaaaacaaacaaacaaacaaacaacccacagctacaccaagttcagaattaaa 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  cactgacaaaaacaaacaaacaaacaaacaacccacagctacaccaagttcagaattaaa 721

                                                                        
Query: 389  tggtatatctcacctatagattgaaacctagtggctcttcaataaataaatgcaaatcag 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  tggtatatctcacctatagattgaaacctagtggctcttcaataaataaatgcaaatcag 661

                                                                        
Query: 449  tgtcaccaggaaatccctgtatataagtgactaatgcactaaat-aaaaaaaaatctgaa 507
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 660  tgtcaccaggaaatccctgtatataagtgactaatgcactaaataaaaaaaaaatctgaa 601

                                                                        
Query: 508  gaataaaaatttagttgaattgcaacaaatagtaaaatgagcaacaaatatttactggaa 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 600  gaataaaaatttagttgaattgcaacaaatagtaaaatgagcaacaaatatttactggac 541

                                                                        
Query: 568  aactactgtcttccaggtgatttgttaagtgctgcaaagtatccttatttaatattatta 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540  aactactgtcttccaggtgatttgttaagtgctgcaaagtatccttatttaatattatta 481

                                                                
Query: 628  acaaccaataatgtagataattattatcgtgatgttatatttttaaaaacta 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480  acaaccaataatgtagataattattatcgtgatgttatatttttaaaaacta 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space:   715830
Effective search space used:   715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)