NNNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAAACCTGAAGAGAGCAGAGTGAGAAATTGTTCAGGAGAAT
GCAGGTTCTCTCAGAGGGAAACAAAGTGCTATGAATATGTGAGTGCAGCT
TTGCACAGAGGCCATTGTGCCTGTGAGTTCATGTTCCTGCTTAGGACAGA
TTGCAATGGAGACAAAAGTGTAGGTGCCTGCTGATGTCTCGAGTTGAGGA
TTAACCTGTAGTGCAGGGGACTGCAGGGGCCAGGGAAGGGACCTGGGCAA
ATAAGTGCAGGAGCCTTCAGAAGACTAGGTTATCTGGGGACAGTGGGCTA
TACACAGACAAGCTGGTCTCCAGTTGAGTTGAGGTCTGAACTCTAGTAGA
ACCTGATGGGTGACAATTCCCACCTACATGGGACAGAAGGTGTTCCCTCA
TGTCTTCTGGCCCCCTGGCTCCTGTTGAATTTACCACCCCCACATACCCC
ACAAGAGAGGATAGTGGCTAGCAGTCATGTACACAATGTCCCAAGCTTCT
GAACTTCAGGCTAGACTTCTCCCAATTACCTAGCAACAACAAGATAACAA
GTCCACTATAAGAGGGGCTGCTTGGCCCACTCCTCACTCTCTTAAGCTTT
TACTTTCTTTACTCTCCCTCTTACTCTCTCTCTCTTACTCTTTTAAGCTT
TTACTTTCTTTAGTCTCTCTCTAAGCCCTCTCTCTCTAAGCCTTCACTTT
TCTTACTCTCTAACTCTC

NTTAATTTATCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGCAAGAGAGAG
TACCAAATATGCACCACCATCTCTGACAATCAATAGAGTTAGACGTGTCA
GTATTAGATTGCATTCACTTGTTATTACAACATTGGTTATAATAGCAAAG
TAGCTGAACAAAAATGATAATATCCTACAAAAGAATAGTTGAGTACATTG
TGGTACATACTGTGAACTATATAATATATAGTTACAAGGAAGATAGTTTA
CAACTATTTTGTCAATTTGTAGTTATAAACTAATGTATATACTACAACCT
CACATGTTAAAATATGGAAAAATTCAAAATATCTCTATGTATATTTTAAG
TGGATATTGCTTCTAATATCATACAATAGGATTTGGAAGAATTCATACTA
GGAACTTAATATTGGTGAACATGATAGGAAGTGAAATAAAGAACACTGCA
GATTTCTCCTGAGATGCTAGCAAATGAAAAATAAAGTAGATTATTGTTCT
AATTACATATAGGTTTTTTACTATTATATATCAAAGTAAACTGTGTTAAC
TTATAGTAACTTTGGCCAATGACTCAACAACTATAATTCATTCCTGTTAC
TAGAGGTTTTATTTGGTAGCATTTGCGTCATTATATTTCTCATTATAAGG
TGATGGGAGAAAAGGCCTTGGTCCCTGTGAGGCTTGATGCCCTANNCATA
GGGAATG

Query= MSMg01no542_l22.b1 MSMg01no542_l22.b1 CHROMAT_FILE:
MSMg01no542_l22.b1 PHD_FILE: MSMg01no542_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:53 2005
         (664 letters)



>mm_chrX_4767965_4769029
          Length = 1065

 Score = 1133 bits (586), Expect = 0.0
 Identities = 643/662 (97%), Gaps = 3/662 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctc 264

                                                                       
Query: 65  agagggaaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcct 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 agagggaaacaaagtgctatgaatatgtgtgtgcagctttgcacagaggccattgtgcct 324

                                                                       
Query: 125 gtgagttcatgttcctgcttaggacagattgcaatggagacaa-aagtgtaggtgcctgc 183
           ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 325 gtgagttcatgttcctgctgaggacagattgcaatggaga-aagaagtgtaggtgcctgc 383

                                                                       
Query: 184 tgatgtctcgagttgaggattaacctg-tagtgcaggggactgcaggggccagggaaggg 242
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 384 tgatgtctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaaggg 443

                                                                       
Query: 243 acctgggcaaataagtgcaggagccttcagaagactaggttatctggggacagtgggcta 302
           |||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 444 acctgggcaaataagtgcaggagccttcagaagacttggttatgtggggacattgggcta 503

                                                                       
Query: 303 tacacagacaagctggtctccagttgagttgaggtctgaactctagtagaacctgatggg 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 aacacagacaagctggtctccagttgagttgaggtctgaactctagtagaacttgatggg 563

                                                                       
Query: 363 tgacaattcccacctacatgggacagaaggtgttccctcatgtcttctggccccctggct 422
           || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 564 tggcaattcccacctacatgggacagaaggcgttcccttatgtcttctggccccctggct 623

                                                                       
Query: 423 cctgttgaatttaccacccccacataccccacaagagaggatagtggctagcagtcatgt 482
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 624 cctgttgaagttaccacccccacattccccacaagagaggatagtggctagcagtcatgt 683

                                                                       
Query: 483 acacaatgtcccaagcttctgaacttcaggctagacttctcccaattacctagcaacaac 542
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 684 acacaatgtcccaagcttctgaccttcaggctagacttctcccagttacctagcaacaac 743

                                                                       
Query: 543 aagataacaagtccactataagaggggctgcttggcccactcctcactctcttaagcttt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagataacaagtccactataagaggggctgcttggcccactcctcactctcttaagcttt 803

                                                                       
Query: 603 tactttctttactctccctcttactctctctctcttactcttttaagcttttactttctt 662
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tacttcctttactctccctcttactctctctctcttactcttttaagcttttactttctt 863

             
Query: 663 ta 664
           ||
Sbjct: 864 ta 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1065
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1055
Effective search space:   689970
Effective search space used:   689970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)