BAC Information

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BAC

Clone NameMSMg01-542M19
ChromosomeX (Build37)
Map Location 147,984,805 - 147,985,419
singlet/doubletsinglet
Overlap genePhf8
Upstream geneAlas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760
Downstream geneLOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542M19.T7 (MSMg01no542_m19.b1)MSMg01-542M19.TJ (MSMg01no542_m19.g1)
ACCAG608487AG608488
length750752
length of high quality
(start - end)		693 (50 - 742)615 (77 - 691)
definitionCHROMAT_FILE: MSMg01no542_m19.b1 PHD_FILE: MSMg01no542_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:57 2005CHROMAT_FILE: MSMg01no542_m19.g1 PHD_FILE: MSMg01no542_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTAGCTCTGAGCACCATTTCTTAATGGGGTTATTTG
ATTTTCTGGAGTCCACCTTCTTAAGTTCTTTATATATATTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCATTTCCAATCTCTTGGTGG
CCTTTTTGTCTTTTTTTTAAAATATTTTTTATTATTACGTATTTTCCTCA
ATTACATTTAGAATGCTATCCCAAAAGTCCCCCATACACTCCCCCCCACT
TCCCTACCTGCCCATTACCATTTTTTGGCCCTGGCATTCCCCTGTACTGG
TGATATAAAGTTTGAGTGTCCAATGGGACTCTCTTTCCATTGATGGGCGA
CTAGGCTATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTA
CTGGTTAGTTCATAATGTTGTTGCACCTGCATGGTTGCAGATCTCTTTAG
CTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGCTCCATC
CAATAGCTGACTGTGAGCATCTACTTATGTGTTTGCTAGGCCCCGGCCTA
GTCTCACAAGAGACAGCTATATCTGGGTCCTTTGAGCCGACGCTTGCTAG
TGTTTGCAATGGTGTCATCCTTTGGAGGCCAATTATGGGATGAATCTTTG
GATATGGCAGTCTCTAAATGGTCCATCCTTTTGTCTCAGCTCCAAACTTT


NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTCAGCTGACTTCCAGTGGG
CTTCAGAATCACTTCATCTGAGCTGTGTGGGCCATAGAGAAAAAAAAAAC
ATGACCTTGAGATTCTGCTCACTAAAGGCCTTAATGGCCTCTCACAAAAG
GGATATAGTCTTCTGAGGGAGTCTTATATGGGTTGACAACTAATGGCATA
AACTTCATATGCCAGGAAAAAACATGATGTTTCCAAAGCAGTAGACAAGG
TCACTGACAGAGGTAGGGAAGATATGGTGAACAGGATGTTCTTTTCTGAA
CAACAAAGGAAATTAGTCAATAGCTTACCTAAGAAGAGATATAACTAACA
ATTTTGACTCATTTGTTCTAACCCAAAATAGCAACATCCAATCTTCTCTT
GGCGAAGAGAGCAAAGACTGAGCTTTTAAAAAACAGTATTTACAACCACT
TTCTTAATGCATGTACTTACAAGATGGGAATTGTTTTTAAATTTTTTCAT
ACAATATATTTTGATCATATTATTCTCTACCCCCTCAACTACTCCTAGTC
ATAATGGAGACAAGAGAGTGGTAGATAGATGGAGGTATACACAGTGCCAG
AGCATTAGCTTAGCTTGCAATGAGTCCATGATTGGAACCTCCAGAACCAA
AAAAGAAAAAAAAGACTATGAAGAAAAGGGAAATTAGTTGTATTGAAACA
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_m19.g1 MSMg01no542_m19.g1 CHROMAT_FILE:
MSMg01no542_m19.g1 PHD_FILE: MSMg01no542_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:57 2005
         (615 letters)



>mm_chrX_147984759_147985773
          Length = 1015

 Score = 1189 bits (615), Expect = 0.0
 Identities = 615/615 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtcagctgacttccagtgggcttcagaatcacttcatctgagctgtgtgggccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cacagtcagctgacttccagtgggcttcagaatcacttcatctgagctgtgtgggccata 602

                                                                       
Query: 61  gagaaaaaaaaaacatgaccttgagattctgctcactaaaggccttaatggcctctcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gagaaaaaaaaaacatgaccttgagattctgctcactaaaggccttaatggcctctcaca 542

                                                                       
Query: 121 aaagggatatagtcttctgagggagtcttatatgggttgacaactaatggcataaacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaagggatatagtcttctgagggagtcttatatgggttgacaactaatggcataaacttc 482

                                                                       
Query: 181 atatgccaggaaaaaacatgatgtttccaaagcagtagacaaggtcactgacagaggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atatgccaggaaaaaacatgatgtttccaaagcagtagacaaggtcactgacagaggtag 422

                                                                       
Query: 241 ggaagatatggtgaacaggatgttcttttctgaacaacaaaggaaattagtcaatagctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaagatatggtgaacaggatgttcttttctgaacaacaaaggaaattagtcaatagctt 362

                                                                       
Query: 301 acctaagaagagatataactaacaattttgactcatttgttctaacccaaaatagcaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acctaagaagagatataactaacaattttgactcatttgttctaacccaaaatagcaaca 302

                                                                       
Query: 361 tccaatcttctcttggcgaagagagcaaagactgagcttttaaaaaacagtatttacaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccaatcttctcttggcgaagagagcaaagactgagcttttaaaaaacagtatttacaac 242

                                                                       
Query: 421 cactttcttaatgcatgtacttacaagatgggaattgtttttaaattttttcatacaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cactttcttaatgcatgtacttacaagatgggaattgtttttaaattttttcatacaata 182

                                                                       
Query: 481 tattttgatcatattattctctaccccctcaactactcctagtcataatggagacaagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattttgatcatattattctctaccccctcaactactcctagtcataatggagacaagag 122

                                                                       
Query: 541 agtggtagatagatggaggtatacacagtgccagagcattagcttagcttgcaatgagtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtggtagatagatggaggtatacacagtgccagagcattagcttagcttgcaatgagtc 62

                          
Query: 601 catgattggaacctc 615
           |||||||||||||||
Sbjct: 61  catgattggaacctc 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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