NNNNTTACTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATTTTAGCCCAGGAAACAGGATACTTAAATGCTTAGTA
GAAAAAGTTCTGTCCCAAGCAGATTTTTTTATCCATGCAAAGTCCCTAAA
ATGAATTTTTAGAATTAGAAATCATCTTTAATTAAACATGGTATGGATAA
AGCCATCATGCAGCAATTCATTAACCTGATTTTTTCATAGCTTCAAGAAT
AGGAGAAGGAATAAAAAAATGGACACAATACAACATCTAAATTAACAAAA
TGTGATATCTGTGTATTGGCTTCTAGGTTGCTAATTTTTCCACAGCAGAC
TGATGCTCATTACCCATTAGTTTGTCAGTAAGAAAGCCAAATATTTACAT
ATCCTATTGTTTTAGATATATCCTCAAGTAAACAAAATTTTTACATTTAG
AGTCTGCATGCTTTGAAACTCCATCAAATACCACCCAAAGTCTGCTAGCT
GTAGATAAGCTTCCGGACTGTACAAACCCTCTGTGCTGTTGGTGCTCTTT
ACAGCTCTCAAACCCAGACTCCACACTGGGCAGCTGGGCTGCCATCACTC
ACATATCCATCCTCTTCAACTGCATCCTTCCAGAGATTTCCTCTTGTGAG
TGATGATGATACCCCATTCTCTAAGTAAGTCATATTGTAAGTCCACAAGC
AAACTGATATTCTGAATATTCTGCTATATGTGCTATGAT

TTTTTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAAGGCA
CAACATACCCAAATTTATGGGACCCAATGGAAGCAGTGCTAAGAGGAAAG
TTCAAAATATTATGAGCCTCCATAAAGAAATTAGAAAGTTCCCATACCAG
CAATTTAAAAGTACACCTGAAAGCTGTAGGAAAAAAAATAAGAAGCAAGG
ACACATAACAGAAGTAGAGGGTAGGAAATAATAAAAATCAGGGCTGAAAT
CAATCTGTTAGAAACAAATAAAACAGTACAAAGAATCAACAAACCCAAGA
GCTGGTTCTTTGAGAAAATTAGCAAGTTAGCCAAACCTTTAGCCAAACTA
ACCAAAAGACAGAGAGACAATACCTGAATAAACAAAATCAGAAATGCAAG
TGGAGATCTAACAAGAGACACTGAACAAATTCAAAGAATCATTAGATCTT
GCTTCAATAACCTGTATTCATCCAAAAGGGAAAACCTTAATGAAATGGAT
GATTGTCTAGACAGATATCACATATCAAAGTTAAATCAAGATCAGCTAAA
CAATTTAAACAGCCCTATAACCCTTAAAGAATTAGAAGCAGTCATCAAAA
GTCTCTCAACCAAAAAGCCCAGGGCCATATGGTTTTAGTGCACAATTCTA
TATGACATTCAAAGAAGAGCTAATTCTAACACTCCTCAAACTATTTCACA
AAATAGA

Query= MSMg01no543_c22.b1 MSMg01no543_c22.b1 CHROMAT_FILE:
MSMg01no543_c22.b1 PHD_FILE: MSMg01no543_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:28 2005
         (688 letters)



>mm_chrX_4668821_4669908
          Length = 1088

 Score = 1191 bits (616), Expect = 0.0
 Identities = 670/688 (97%), Gaps = 5/688 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattttagcccaggaaacaggatacttaaatgcttagtagaaaaagttctgtcc 64
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattccattttagtccaggaaacaggatacttaaatgcttattagaaaaagttctgtcc 264

                                                                       
Query: 65  caagcagatttttttatccatgcaaagtccctaaaatgaatttttagaattagaaatcat 124
           |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 caaggagaattttttatccatgcaacgtccctaaaatgaatttttagaattagaaatcat 324

                                                                       
Query: 125 ctttaattaaacatggtatggataaagccatcatgcagcaattcattaacctgatttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttaattaaacatggtatggataaagccatcatgcagcaattcattaacctgatttttt 384

                                                                       
Query: 185 catagcttcaagaataggagaaggaataaaaaaatggacacaatacaacatctaaattaa 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 catagcttcaagaataggagaaggaataaaataatggacacaatacaacatctaaattaa 444

                                                                       
Query: 245 caaaatgtgatatctgtgtattggcttctaggttgctaatttttccacagcagactgatg 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaatgtgatatctgtgcattggcttctaggttgctaatttttccacagcagactgatg 504

                                                                       
Query: 305 ctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 564

                                                                       
Query: 365 atatatcctcaagtaaacaaa-atttttacatttagagtctgcatgctttgaaactccat 423
           ||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 atatagcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactccat 624

                                                                       
Query: 424 caaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctctgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctctgt 684

                                                                       
Query: 484 gctgttggtgctctttacagctctcaaacccag-act-ccacactgggcagctg-ggctg 540
           ||||||||||||||||||||||||||||||||| | | || |||||||| |||| |||||
Sbjct: 685 gctgttggtgctctttacagctctcaaacccaggatttcc-cactgggcggctgtggctg 743

                                                                       
Query: 541 ccatcactcacatatccatcctcttcaactgcatccttccagagatttcctcttgtgagt 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 744 ccatcactcacatatccatcctcttcaactgcatccttccagagatttcctcttctgagt 803

                                                                       
Query: 601 gatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgatatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgatatt 863

                                       
Query: 661 ctgaatattctgctatatgtgctatgat 688
           || |||||||||||||||||||||||||
Sbjct: 864 ctaaatattctgctatatgtgctatgat 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)