Query= MSMg01no543_p19.b1 MSMg01no543_p19.b1 CHROMAT_FILE:
MSMg01no543_p19.b1 PHD_FILE: MSMg01no543_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:31 2005
(688 letters)
>mm_chrX_139866499_139867586
Length = 1088
Score = 1093 bits (565), Expect = 0.0
Identities = 590/599 (98%), Gaps = 6/599 (1%)
Strand = Plus / Minus
Query: 94 gggggacatctgggagattctgactttngaagagacaagctacctagggcactcagttct 153
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1087 gggggacatct-ggagattctgacttt-gaagagacaagctacctagggcactcagttct 1030
Query: 154 cataatgtttatcactttcattagactctctcaaaacttttatatatataaggccaatcc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 cataatgtttatcactttcattagactctctcaaaacttttatatatataaggccaatcc 970
Query: 214 agtacatcctaaaggaactatctaccttgcttggcctatacaatagactctttgggagag 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 agtacatcctaaaggaactatctaccttgcttggcctatacaatagactctttgggagag 910
Query: 274 ccttttggagacagaagagaaggaatgggatgaggaacagtcggagggagaacaaggagg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 ccttttggagacagaagagaaggaatgggatgaggaacagtcggagggagaacaaggagg 850
Query: 334 ggaataatgactaaac-tttttttttaaagattaaaggataataataaaaacatgtaata 392
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ggaataatgactaaacttttttttttaaagattaaaggataataataaaaacatgtaata 790
Query: 393 aaatatcaatgtctaggtaattataatatgtattcagaaaagaaaagcactgaaacggaa 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aaatatcaatgtctaggtaattataatatgtattcagaaaagaaaagcactgaaacggaa 730
Query: 453 gttttagcattgggaaaattatttctttttaaactcagctcataattatcattcaggaac 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gttttagcattgggaaaattatttctttttaaactcagctcataattatcattcaggaac 670
Query: 513 ataataagattagagacctcggatcaacttcattgaagttccactaagactttggggctt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ataataagattagagacctcggatcaacttcattgaagttccactaagactttggggctt 610
Query: 573 gattttggttcctaactaagcctttctcacaattatgcagtggtaaatcactggcatttt 632
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 609 gattttggttcctaactaagcctttctcacaattatgcagtgataaatcactggcatttt 550
Query: 633 ttcc--tttttttaaaaga-atattctttatttacatttcacatgttatcccctttcct 688
|||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct: 549 ttcctttttttttaaaagatatattctttatttacatttcaaatgttataccctttcct 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_p19.g1 MSMg01no543_p19.g1 CHROMAT_FILE:
MSMg01no543_p19.g1 PHD_FILE: MSMg01no543_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:31 2005
(590 letters)
>mm_chrX_139672276_139673271
Length = 996
Score = 888 bits (459), Expect = 0.0
Identities = 476/485 (98%), Gaps = 6/485 (1%)
Strand = Plus / Minus
Query: 112 ggatttccagggcttacaatggggaagtagggggttattattatttgatgggtaagaata 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 ggatttccagggcttacaatggggaagtagggggttattattatttgatgggtaagaata 937
Query: 172 attcagtttgggggatgaaaatgacctggagacagatggaggtgatgactgcatagatat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 attcagtttgggggatgaaaatgacctggagacagatggaggtgatgactgcatagatat 877
Query: 232 atacttgtacttaatgcctcggaatataagctgcaaaattgtacatttgctactctatac 291
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 876 atacttgtacttaatgcctcggaatataagctgtaaaattgtacatttgctactctacac 817
Query: 292 aatttactgcagtaaaaaaacaattttaaaaaatactttttttgtcagtgagaatgttcc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aatttactgcagtaaaaaaacaattttaaaaaatactttttttgtcagtgagaatgttcc 757
Query: 352 ccagactgccacagccacatttgcattggtctcatcccaacttcccactgccttggatta 411
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ccagactgtcacagccacatttgcattggtctcatcccaacttcccactgccttggatta 697
Query: 412 atcagcttccctccagttctctcaacccctgctctagtcagctaaatcaccatgacactg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 atcagcttccctccagttctctcaacccctgctctagtcagctaaatcaccatgacactg 637
Query: 472 agccactagaaggattttttttttt------ggtagggatacatttcccagagattggaa 525
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 636 agccactagaaggattttttttttttttttgggtagggatacatttcccagagattggaa 577
Query: 526 tgtcacagtgatgtcaccaagaatctgagctgagtgatttctctgtcagccgagtaattc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgtcacagtgatgtcaccaagaatctgagctgagtgatttctctgtcagccgagtaattc 517
Query: 586 ctgac 590
|||||
Sbjct: 516 ctgac 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 996
Length adjustment: 10
Effective length of query: 580
Effective length of database: 986
Effective search space: 571880
Effective search space used: 571880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
