GGTACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTACTCAATTCATTGGAGACAACAGCAAATCTGTTTTGT
CCGAATGGAGAATGGATGAGGATTTGTGCTCCATTAAAAAGGTCAATAAA
TTGACTAATTTGATTCCTGCCTGTATATTTGTGTGTGCTTTGTACTTTTT
TCTGCTTTGTGTTGTGCTCTGTGTTCTTGATTATTAACTCTAGGGTCCTT
ACCATACTTGCAAAATGAAACATTTCTCAGTTGGAAAAGCTCTCATTTTT
TTCCTCTGTATACAATATGATTCTTTAAAAAATAAGTTTTTGATTCCTTT
GTACTAATAGTAAGATCAAAATTTCTGGGAAGACACTTTTCATTGAAAAT
ACAGTTTTTCATTCAATAGATTCAGATTACTGTCCCCCCAAATCCTTCTA
CAACCTCTCCACTTCTCGACCCACCCAAATTCACACTTTTTCTTTCTCCT
TTTATTAAAATACAAACAGGCATCTAAATAATAATGATACTATTAATGAT
ACTAATGACAATAATAATGAAGATTAAGATACAAAATAAACAAATGAACC
AGAACAGAACAAAGCAAACATAATGAAAAAGAGGCAAAGAANAAGCACAA
GAAATATACATGTAGACACAGAGACATATATGTTCACAAACACTCAGAAA
TCCCATAAAAACAAAAAAAAAAAAACTGCAAACCATAATA

NNGGGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGAGATCATTGGTCAG
GTTGTGAATATCCTGTATGACTTGAGGGATGTGGCAAAGGGACTGTAGTA
CTTTGGAATATTGGTGAGGTATCCTGAGATTCTACCATGTTGACTAGTTC
CCTCGCTTCTGTTGGAAAGATGCTGAATGTTCTAGAAACCCCGGGAATCG
TCAGCAAAAAATCCAAAGTTTCCTGGACAGGTATAGAATATTCTGGAACT
GCTTGTTTACATCTCACAGTTGTTGGAGTACCTGATGTAATTAGTGGAAA
TTTCTGAGCACATGGTACAGAAGACAAAGGTTTCACAGTCACTTGGGAAG
ATAACAATGTTTTTTTTGTTGTTGTTTGTTTGTTTTGTTTTGTTTTTGTT
TTTTGTTTGTTTGTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTT
TTTAAGNTTTCCTGATGGATGAAGAATTTTTTTCAGATGGAGATGTTTCT
GACTTCCTAGGTTCAGATTTGGGAGGTCACATAACCTCTGTAGAAGGCAG
AGGATTTGTAGTCCCATGGAAAGATGGCAAGGTATCTAGAGATTCTACCA
TGTGTGACAAGTACCATAGCTTCTTTTGGAAAGGTGCTGAATGCTCTTAG
AATTCCTGAGATAGAAATAAAAATCCCTCCTTCACCTG

Query= MSMg01no544_d15.b1 MSMg01no544_d15.b1 CHROMAT_FILE:
MSMg01no544_d15.b1 PHD_FILE: MSMg01no544_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:49 2005
         (689 letters)



>mm_chrX_53358120_53359206
          Length = 1087

 Score =  379 bits (196), Expect = e-109
 Identities = 433/520 (83%), Gaps = 27/520 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctactc-aattcattggagacaacagcaaatctgttttgtccgaatggagaatg 63
           |||||||||| | || || |||||||||||||  | || | ||||| | |||||||||||
Sbjct: 504 gaattcctacccaaagtctttggagacaacagggattccg-tttgttctaatggagaatg 446

                                                                       
Query: 64  gatgaggatttgtgctccattaaaaaggtcaataaattgactaatttgattcctgcctgt 123
           |  ||| ||| |||||||||||||||||||  || ||| |||| |||||| |||| ||||
Sbjct: 445 ggggagtattagtgctccattaaaaaggtccttacattcactagtttgatgcctgtctgt 386

                                                                       
Query: 124 atatttgtgtgtgctttgtacttttttctgctttgtgttgtgctctgtgttcttgattat 183
            |||||| ||||||| ||||||||| |||||| ||||||||| |||||||| |||  || 
Sbjct: 385 ctatttgagtgtgctatgtacttttgtctgctgtgtgttgtgttctgtgttattggctac 326

                                                                       
Query: 184 taactctagggtccttaccatacttgcaaaatgaaacatttctcagttggaaaagctctc 243
           |||||||| |||||||||||||||||||||||||||     ||||||| ||||| || ||
Sbjct: 325 taactctacggtccttaccatacttgcaaaatgaaa-----ctcagtttgaaaatctttc 271

                                                                       
Query: 244 atttttttcctctgtatacaatatgattcttt-aaaaaata--agtttttgattcctttg 300
           || ||  ||||||||||||||||||||||||| ||||||||  ||||| |||  ||||||
Sbjct: 270 atattcgtcctctgtatacaatatgattctttaaaaaaatatcagtttatgagacctttg 211

                                                                       
Query: 301 tactaatagtaagatcaaaatttctgggaagacacttttcattgaaaatacagt-ttttc 359
           |||      ||| ||| | |||| | |||||| |||||| |||||||||||| | |||||
Sbjct: 210 tac------taacatctacattt-ttggaagatacttttaattgaaaataca-tcttttc 159

                                                                       
Query: 360 attcaatagattcagattactgtccccccaaatccttctacaacctctccacttctcgac 419
           ||||| || |||| |||||| |||||||||| |||||||| | |||||||||||||| ||
Sbjct: 158 attcagtacattctgattacagtccccccaactccttctatatcctctccacttctctac 99

                                                                       
Query: 420 ccacccaaattcacactttt-tctttctccttttattaaaatacaaacaggcatctaaat 478
           |||||||||||||||||||| | ||| ||  ||||||| |||||||||||| ||||||||
Sbjct: 98  ccacccaaattcacacttttctttttttc--tttattagaatacaaacaggtatctaaat 41

                                                   
Query: 479 aataatgatac-tattaatgatactaat--g-acaataat 514
           ||| |||||||  ||| |||||||||||  | ||||||||
Sbjct: 40  aatgatgatacaaatt-atgatactaataagaacaataat 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1087
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1077
Effective search space:   731283
Effective search space used:   731283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)