NAAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGAATGTCCATTTGTTATTGGATAACCAATTAGGTGCAC
TTTTTCTTTTCTGAGCAGTCATGATCTATAGTTTTTTTGTTTGTTTGTTT
TTGTTTTTGTTTTGTTTTTGTCTATGATTAGGGCTCTATGAAATTTCCCC
CTTCCATGATAGCATGTCTATTAGTGTTGGCCTTGTTCAGGTCTTAGTTA
TGCACCCATGTTAATGAGACTTTATTAATGTAGCTTGACGAAACTCTGCT
CAGCCTTTCTCTCCAATAACTTCTGCCATGTTCAAAACATTCCTAAAACT
AGTCTCCAAGATCTCTTCCCTTATTTGGCCACATTCTCCTCTTGAGGTTG
ACTACCAAGGTCCAGCTATCAGAGTATTTTAGTCCATCAATCATAGCCAC
CTTTGGCTCACCTAATTAACATGCCCAATTAAAATTAAACACCTTGTCCT
AACACAGGCTTTTCCATTTACCTTTATAAATCACCATTTGCTTATGGGAC
ATGTCTGTCTCTTCTCTAACCAGAGGTACCCCTTTGTCCCACTCTGGGAC
ACATACCTCTCCTTTCTTGCCCTTGTTGTCTTCCCCGATACTTCATCTTC
TGTCTTTGTCCCTTATCCATGACCTCTGTCCCCTCTGGGGCAAATAACTT
TGTTGTGCTGATAACTTGGTCATGGGAGTCTTGAACTGACACTT

ATGCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGGGTGAGCTGAAATCTTG
TGAAGATGCAGCCTTTCAACAAAATAATGAGACCTATTGTGTAAGTATTT
GGAGACTACTTGGAGAAAAAAATCATTCCAGAATAAAAGACTTGTTTGTG
CTAAACCTACATATGTTTTTCAATTTGGAAATTACATTTACATATTAAAT
CCAAATATAATATTATGGCTATGAATAAATGTTTATCTCAATTATTTCAC
ATTGCTCCACTTAAAATATAAAAATGATAACTTACAAAAGTAATAAACTG
GATTATACTATACATGCTTAAATCAATATAAAAAATCTCTATAATTTTTA
AAACTCCAGAGAAAAATGCTAATAGCATAGAAACACTCACTATATTATGA
ATATTTTGAAGCAAGTTATGATGTACAATATTTGTATTTTTTTATTTCTA
GTTTTTGAACTATATTGAGTTATATATTATTTCTGATTAAATTTATATCC
CTTCAAGGTAGAAAAATGGTAATAATTATGAAGATCAAGAAGAAATTTGC
CATGTCCATATTTTGTGAGACGATAAATGTCTAAGAAAAATAATTTAATA
TTATAAATAGTGGATTAAGAATGATACAAAAGCCACAAATAATGTTCTGA
CGTCTGATCAGATAACACTGTGGTCCCAAAGCATTGGGGAGATAATTTAC
CAN

Query= MSMg01no544_e05.g1 MSMg01no544_e05.g1 CHROMAT_FILE:
MSMg01no544_e05.g1 PHD_FILE: MSMg01no544_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:52 2005
         (667 letters)



>mm_chrX_162330896_162331962
          Length = 1067

 Score = 1268 bits (656), Expect = 0.0
 Identities = 662/664 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagggtgagctgaaatcttgtgaagatgcagcctttcaacaaaataatgagacctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagggtgagctgaaatcttgtgaagatgcagcctttcaacaaaataatgagacctatt 260

                                                                       
Query: 61  gtgtaagtatttggagactacttggagaaaaaaatcattccagaataaaagacttgtttg 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtataagtatttggagactacttggagaaaaaaatcattccagaataaaagacttgtttg 320

                                                                       
Query: 121 tgctaaacctacatatgtttttcaatttggaaattacatttacatattaaatccaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctaaacctacatatgtttttcaatttggaaattacatttacatattaaatccaaatat 380

                                                                       
Query: 181 aatattatggctatgaataaatgtttatctcaattatttcacattgctccacttaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatattatggctatgaataaatgtttatctcaattatttcacattgctccacttaaaata 440

                                                                       
Query: 241 taaaaatgataacttacaaaagtaataaactggattatactatacatgcttaaatcaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaaatgataacttacaaaagtaataaactggattatactatacatgcttaaatcaata 500

                                                                       
Query: 301 taaaaaatctctataatttttaaaactccagagaaaaatgctaatagcatagaaacactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaaaatctctataatttttaaaactccagagaaaaatgctaatagcatagaaacactc 560

                                                                       
Query: 361 actatattatgaatattttgaagcaagttatgatgtacaatatttgtatttttttatttc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 actatattatgaatattttgaagcaagttatgatgtacaatatttgtattttcttatttc 620

                                                                       
Query: 421 tagtttttgaactatattgagttatatattatttctgattaaatttatatcccttcaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtttttgaactatattgagttatatattatttctgattaaatttatatcccttcaagg 680

                                                                       
Query: 481 tagaaaaatggtaataattatgaagatcaagaagaaatttgccatgtccatattttgtga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagaaaaatggtaataattatgaagatcaagaagaaatttgccatgtccatattttgtga 740

                                                                       
Query: 541 gacgataaatgtctaagaaaaataatttaatattataaatagtggattaagaatgataca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gacgataaatgtctaagaaaaataatttaatattataaatagtggattaagaatgataca 800

                                                                       
Query: 601 aaagccacaaataatgttctgacgtctgatcagataacactgtggtcccaaagcattggg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaagccacaaataatgttctgacgtctgatcagataacactgtggtcccaaagcattggg 860

               
Query: 661 gaga 664
           ||||
Sbjct: 861 gaga 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)