Query= MSMg01no544_j16.b1 MSMg01no544_j16.b1 CHROMAT_FILE:
MSMg01no544_j16.b1 PHD_FILE: MSMg01no544_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:19 2005
(687 letters)
>mm_chrX_142492976_142494056
Length = 1081
Score = 1237 bits (640), Expect = 0.0
Identities = 671/683 (98%), Gaps = 6/683 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtcttgtacagttaagactttgcaaataggcttatagacactttagaccacat 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcttggacagttaagactttgcaaataggcttatagacactttagaccacat 264
Query: 65 aattgttctccgttatctgggagggcattgtatgcaattgtactgtatgtataagatttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattgttctccgttatctgggagggcattgtatgcaattgtactgtatgtataagatttt 324
Query: 125 aagaagacagaggttttacaaacagcaagacaactgctgaaacagggtacagagttccaa 184
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaagacaga--ttttacaaacagcaagacaactgctgaaacagggtacagagttccaa 382
Query: 185 accaagaaaccaccaacagttggatgagacaatccattcttcttcagacactctggaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 accaagaaaccaccaacagttggatgagacaatccattcttcttcagacactctggaaga 442
Query: 245 aacaagacctgtcagcatgacttttggccaacaaaacatgatctccaactataggttcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacaagacctgtcagcatgacttttggccaacaaaacatgatctccaactataggttcaa 502
Query: 305 aaattataagaaaataatttttttgctgcttcaaactactcagtttacagtaacttttta 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaattataagaaaatattttttttgctgcttcaaactactcagtttacagtaacttttta 562
Query: 365 taataatggaaaagctatgaagaaatgactcactgttcgaagctcacagaaaccattact 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 563 taataatggaaaagctatgaagaaatgactcactggtcgaagctcacagaaaccattact 622
Query: 425 atggcaccctattattgtaaaaaaaatgctttatcaaggagccaagtgaaaaagaaatca 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 623 atggcaccctattattgtaaaaaaa-tgctttatcaaggagccaagtgaaaaagaaatca 681
Query: 485 caaaatatatattctatattctatagaggaaattataggaagtgagaatgaggaatgtct 544
||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caaaacatatattcta-att--atagaggaaattataggaagtgagaatgaggaatgtct 738
Query: 545 tcttgattagatagcaaaaagaggttcttttattttacaagaggagctatgttctgttta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcttgattagatagcaaaaagaggttcttttattttacaagaggagctatgttctgttta 798
Query: 605 gganattatgagcttgcaatgaccacatgcagtggtgtcttctattcctatgtatctctg 664
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ggaaattatgagcttgcaatgaccacatgcagtggtgtcttctattcctatgtatctctg 858
Query: 665 aaaactcaattccaaaatggaac 687
|||||||||| ||||||||||||
Sbjct: 859 aaaactcaataccaaaatggaac 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1081
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1071
Effective search space: 725067
Effective search space used: 725067
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_j16.g1 MSMg01no544_j16.g1 CHROMAT_FILE:
MSMg01no544_j16.g1 PHD_FILE: MSMg01no544_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:19 2005
(658 letters)
>mm_chrX_142626305_142627362
Length = 1058
Score = 1247 bits (645), Expect = 0.0
Identities = 654/657 (99%)
Strand = Plus / Minus
Query: 1 actctggcctggaactcagagatccacctgcctgtgcctcccaagcactaggattaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 actctggcctggaactcagagatccacctgcctgtgcctcccaagcactaggattaaagg 790
Query: 61 catggcctggccaattttgctctttcataatccagtattctaataattttttattttaat 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 789 catggcctggccaattttgctctttcataatccagtattctaatagttttttattttaat 730
Query: 121 cttctggcctgagattttatgggatatttccacctgagcagaacacttgaagacaaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cttctggcctgagattttatgggatatttccacctgagcagaacacttgaagacaaagaa 670
Query: 181 caacagaattctgatgattttgttcccatgtataaacaagtgatgataattaactgttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 caacagaattctgatgattttgttcccatgtataaacaagtgatgataattaactgttca 610
Query: 241 tagaaaatgcctaaaaatgatctaaatatataacattcaaccttactttatggggtcaat 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 609 tagaaaatgcctaaaaatgatctaaatatatatcattcaaccttactttatggggtcaat 550
Query: 301 aaatggacaagtcattttggcactcattctttaagaatatcactttgcctcttttcaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaatggacaagtcattttggcactcattctttaagaatatcactttgcctcttttcaatc 490
Query: 361 atatttataaattccataagttattttgaaaatgcaaaatcaatacgacatcattccttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atatttataaattccataagttattttgaaaatgcaaaatcaatacgacatcattccttc 430
Query: 421 aattattcagaagaaacagatacatgccaaaaaggaatggcatgccaatttgtgttattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aattattcagaagaaacagatacatgccaaaaaggaatggcatgccaatttgtgttattc 370
Query: 481 tgaataatatccacccacatagattatataatttatctaagactgaagtttggattctta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgaataatatccacccacatagattatataatttatctaagactgaagtttggattctta 310
Query: 541 tgaaagcttgctcatatcctcttcacagtttctaattacaaagtcagagagagagaaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgaaagcttgctcatatcctcttcacagtttctaattacaaagtcagagagagagaaaga 250
Query: 601 gagagagagagagagagagagagagagagagagagagagagagagagagagagagag 657
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 gagagagagagagagagagagagagagagagagagagagaaagagagagagagagag 193
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 120
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
