BAC Information

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BAC

Clone NameMSMg01-544M05
ChromosomeX (Build37)
Map Location 53,094,578 - 53,094,957
singlet/doubletsinglet
Overlap geneLOC666268
Upstream geneLOC666135, LOC100038960, EG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315
Downstream geneLOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544M05.T7 (MSMg01no544_m05.b1)MSMg01-544M05.TJ (MSMg01no544_m05.g1)
ACCAG609986AG609987
length803753
length of high quality
(start - end)
355 (72 - 426)446 (83 - 528)
definitionCHROMAT_FILE: MSMg01no544_m05.b1 PHD_FILE: MSMg01no544_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:32 2005CHROMAT_FILE: MSMg01no544_m05.g1 PHD_FILE: MSMg01no544_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AAGACTGATAAXXXXXXXXXXXXXXXXXXXXXXXXTATCGAAAGGAGGCG
CGGAATTCGTGATATATCAATCTAATGGCTGAGAAGCACTTAAAGATATG
TTCATTATCCTTAGTCATAAGGTAAATGCAAAATGATATGACTCTGAGAT
TTTATCTTACAAATATCAGAATGGCTAATATCTAAGACTTAAATAACAGC
ACATTCTGCCTCAGGGAGAAAGACAGACAACACATCAGAGTAAAAGGCTA
GAAAACAAATTTCCAAGCAAATGGTCTGAAAAAAAAGCTGGAGTAGCCAT
TCTAATATCAAACAAAATCGACTTCTAAAAGAAAGTTATCAAAAGAGTCA
AGGAAGGACATCACATTAAGTTGAGGTTGTGGAAGTAATGGAAGACTCCT
TCATTGCTGGTACAAATGTAAACTTGTACAACAACTTTGGGAATAAATTT
TTTGGCGTCTCATATAATTGGGAGTAATTGTATCAAAAAAATAAAACAAA
ATCCTATAACAAACTTAAATCCCTTTACTTATCTATATCATTTCCTATTA
TTCTTGCCATATTTCATCTTATCCCTTTATATAAAACCCTTTTATTTTTT
TCTTTTATCCATAACTATACCCTACTTTTTATATCTTCCTAAGTTATATT
ACCCAAACGGTGAAAATTTCCATCCCTCACTCCCCCTTAAATAATTAACC
TAACCTAAAATTATGGTTTCATAAGAAGACATTTTTTTCTGTAAACCGAC
CCTGGATAATCCTGGGAAAACCAACCGCCTATATACTCCCCCCCAAATCC
ATA
AAGGACAGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAAAAAAAAAAAAAC
TTGTAATATTTAATTTAAACAATTCATACATTTACACCTCACAGCACTTC
TTCATAACTGTACTACCATTGCTGAGATCCTTCTTCTTCCCAAATGGTCC
TTCTCTTATTTTTATAATGGTTCTCCTTTTCTTTGTGTGTATATCTGATA
ACATCTCATGCAGGTGGTTGTATTGTACTAGTTGCTATATTTTTGTGATC
ACAAGGTCTAAAGGACCACAATCTGGTTTTGATCTACATATGTAAGAGCA
TCTGACCCTGAATTGCTCATTTTCCTGAATCTACTTCTCCAGTTAAGGGA
TCACAAACACCACTTTTGAAGTACTCTATTGAAATGGGAAAAAATTGAAA
ATATTACACCGTATCTTCATCTGTTTCTTCTTGAGATGATATATTCTCAT
CTTTGTCAAATGCTGGGCTCTGTACTATTTAGACAAAGAAAATGGAAACA
TTATATGCTATATTAGCAAAAGGGAATAAAGTATTAATGATTTGAATTTC
TCAGGAAATACTGCCCAGGTGAATTTTTGAAACAGCTTTTATAAATGACA
TATTTACGTACATGAAATTCCGGTATAGGTATAAGATGAGAAGTAAGGTT
TTCCCAATTTTAGGACTAGTTGAATATTTTTTACCCATTTTATTTCAAAA
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_m05.g1 MSMg01no544_m05.g1 CHROMAT_FILE:
MSMg01no544_m05.g1 PHD_FILE: MSMg01no544_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:32 2005
         (446 letters)



>mm_chrX_53094110_53094957
          Length = 848

 Score =  275 bits (142), Expect = 5e-78
 Identities = 324/396 (81%), Gaps = 34/396 (8%)
 Strand = Plus / Minus

                                                                       
Query: 67  tcttcataactgtactac-cattgctgagatccttctt-cttcccaaatggtccttctct 124
           ||||||||||| | |||| | ||||||||| || |||| ||| ||| |||||||  ||||
Sbjct: 848 tcttcataactctcctactc-ttgctgagacccgtcttcctt-ccagatggtccacctct 791

                                                                       
Query: 125 tatttttat-aatggttctccttttctttgtgtgtatatctgataacatctcatgcaggt 183
           | ||||||| || | |||||||||||||||||||||||||||  || |||||||||||||
Sbjct: 790 tctttttatgaa-gtttctccttttctttgtgtgtatatctgggaagatctcatgcaggt 732

                                                                       
Query: 184 ggttgtattgtactagttgctatatttttgtgatcacaaggtctaaagg--accacaatc 241
           |||  ||||||  |||||||||| | |||||||| ||||||||| ||||  ||  ||| |
Sbjct: 731 ggtcctattgttttagttgctatgtgtttgtgattacaaggtctcaaggtcac--caagc 674

                                                                       
Query: 242 tggttttga--tc--tacata--tgtaagagcatctgaccctgaattgctcattttcctg 295
           |||  ||||  ||  || |||  |||    |  ||||||| ||||||||| || ||||||
Sbjct: 673 tgggcttgaactcaatatatagctgt----g--tctgaccttgaattgctgatcttcctg 620

                                                                       
Query: 296 aatctacttctccagttaagggatcacaaacaccacttttgaagtactctattgaaatgg 355
           |||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||| |  
Sbjct: 619 aatctacttctccagtaaaggcatcacaaacactacttttgaagtacactattgaact-- 562

                                                                       
Query: 356 g----aaaaaattgaaaatattacaccgtatcttcatctgtttcttct---tgagatgat 408
           |    ||||||||||||||||||| || ||||||||||||   |||||   ||||  || 
Sbjct: 561 gacaaaaaaaattgaaaatattaccccatatcttcatctg---cttctatgtgaggcgac 505

                                               
Query: 409 atattctcatctttgtcaaatgctgggctctgtact 444
           ||||||||||||||||||||||||||||||| ||||
Sbjct: 504 atattctcatctttgtcaaatgctgggctctttact 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 848
Length adjustment: 10
Effective length of query: 436
Effective length of database: 838
Effective search space:   365368
Effective search space used:   365368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)