BAC Information

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BAC

Clone NameMSMg01-545D02
ChromosomeX (Build37)
Map Location 80,616,622 - 80,616,929
singlet/doubletsinglet
Overlap geneDmd
Upstream geneEG629310
Downstream geneTsga8, LOC100042306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545D02.T7 (MSMg01no545_d02.b1)MSMg01-545D02.TJ (MSMg01no545_d02.g1)
ACCAG610313AG610314
length721713
length of high quality
(start - end)
505 (34 - 538)308 (69 - 376)
definitionCHROMAT_FILE: MSMg01no545_d02.b1 PHD_FILE: MSMg01no545_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:06 2005CHROMAT_FILE: MSMg01no545_d02.g1 PHD_FILE: MSMg01no545_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATCT
TTCCAAGACTTTTATCATGAATGGGTATTGGATCCTGTCAAATGCTTTTT
CCGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATA
TACTGGATTACGTTGATGGATTTCCGTATTTTGCACCATCCCTGCATCCC
TGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGATGTGTTCTT
GGATTCGGTTAGCAAGAACTTTATTGAGGATTTTTGCATCGATATTCATA
AGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTTTGTGGCTT
AGGTATCAGAGTAATTGTGGTTTCATAGAATGTGTTGGGTAGAGTACCTT
CTCCTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGAATTAGGTCTTCT
TTGAAGGTCTGATAGAACTCTGCGCTAAACCCATCTGGTCCTGGGCTTTT
TTTTGGTTGGGAGACTATTGACTAATGACTGCTTCTATTTCTTTAGGGGG
ATATAGGACTGGTTTAGATCATTAACCTGGATCTTGATTTAGCTTTTGGN
ACCCTGGGTAACTGGTCTAAAAACTTGGTTCCATTTTCACCCAGGGTTTT
TCCAGGTTTTGGTTGAAGTAATAGCCCCTTTTTGAAAAAAGGATTTGAAA
GGGGGTGTTTTGGGATTTTTT
ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTCTGAAAAACCTTGGTACATTTTTCAGTG
GTGGATCTCTTAGAAACTATTATGTGCTTTCTGAAGTAATTAGGTTACTC
AATTTTCTACTTACTCTTAGCTTAATTTGAGTAATTTACATCATACTACA
ACATCATTCATTTACTAGAATTTTCACAATTATTCTTTCAGACAAAATTG
CTTATGATATTTTCTTAATTTCTTCTGCAAATTTTGCTACGCATACTTTC
TCATTCCCGCTCCTGACTGTTTCATTCTTTTTTTTTTTTTCATTTCACAT
AGCAATTTTCCTTTGTGCAAATTAGAAGTGGGTTTTCTTTTCTGCAGCTA
TTTTAAAGAGCCATCCTTAAACAAACTCATTCTATATTTTAGTGTTCCAT
AACCATATAGGATGGAATTTTTATTTTCACTTCCTTTTTTGACTGGTTAT
TAAAGACACTTAAATAGATTTAAAGCACAGGGCCTAAAAGAAAGTAATAG
GGACCTAGGGACAAAAGGGAAAAATGGGGTTTCTCTCCAAATTTGCTTGG
AAGGTTTTTTAAAAAAGGGGATTTATTTAAAAATAATCCTTTAAAAATAA
AGGGGAATATTCTCCTTCTGAAAACCAGAATTTCCCGGAAACCCTTCAAA
AATTTATCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_d02.g1 MSMg01no545_d02.g1 CHROMAT_FILE:
MSMg01no545_d02.g1 PHD_FILE: MSMg01no545_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:06 2005
         (308 letters)



>mm_chrX_80616422_80617129
          Length = 708

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctgaaaaaccttggtacatttttcagtggtggatctcttagaaactattatgtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atttctgaaaaaccttggtacatttttcagtggtggatctcttagaaactattatgtgct 449

                                                                       
Query: 61  ttctgaagtaattaggttactcaattttctacttactcttagcttaatttgagtaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttctgaagtaattaggttactcaattttctacttactcttagcttaatttgagtaattta 389

                                                                       
Query: 121 catcatactacaacatcattcatttactagaattttcacaattattctttcagacaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 catcatactacaacatcattcatttactagaattttcacaattattctttcagacaaaat 329

                                                                       
Query: 181 tgcttatgatattttcttaatttcttctgcaaattttgctacgcatactttctcattccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgcttatgatattttcttaatttcttctgcaaattttgctacgcatactttctcattccc 269

                                                                       
Query: 241 gctcctgactgtttcattctttttttttttttcatttcacatagcaattttcctttgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctcctgactgtttcattctttttttttttttcatttcacatagcaattttcctttgtgc 209

                   
Query: 301 aaattaga 308
           ||||||||
Sbjct: 208 aaattaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)