BAC Information

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BAC

Clone NameMSMg01-546G08
ChromosomeX (Build37)
Map Location 15,924,952 - 15,925,408
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043949
Downstream geneLOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063, Efhc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546G08.T7 (MSMg01no546_g08.b1)MSMg01-546G08.TJ (MSMg01no546_g08.g1)
ACCAG611231AG611232
length605691
length of high quality
(start - end)
371 (45 - 415)504 (72 - 575)
definitionCHROMAT_FILE: MSMg01no546_g08.b1 PHD_FILE: MSMg01no546_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:40 2005CHROMAT_FILE: MSMg01no546_g08.g1 PHD_FILE: MSMg01no546_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACTAACTTTAATCAAGACCACTCACGATCATCAGAACACAGCACT
CCCATGCCACCTAGTCCTGGACACCACAATACAACCGAAAAGATAGACCC
GGATTTAAAAGCATATTGCATGATAATGGTAGAGGACATCAAGAAGGACT
TTAATAACTCACTTAAAGAAATACAGGAAAACACTGCTAAAGAGTTACAA
ATCCTTAAAGAAAAACAGGAAAACACAACTAAACAGGTAGAAGTCTTTAT
AGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCA
TACCAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAG
GCAACACTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCTTAGACGC
GAGCATGAGCCACCAGATATACAGTAGATGGGAAGGAGAGAATTCTTCAG
GGTGCCCAAAAACATTCCCCATTAGAAGAAATATTCCGGGCCCCCAACCC
ATTTCCCTTAGGGATTTATTTTATAATAAAACCGCCCAATAAAAAGAAAA
CCCCA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTAAATTCTTAGGCAAATGGATGTATTT
TATTTTATTTTATTACTTTAAATGAATGAAACAGAATGAAAAATTAAGGT
AACTGTCATTTATACTTGCCACAAGAAGGAAAACCAGTTTTCTCCAATAG
AGTGACACTGATTAATCAATGATTCCAGGTCACACCTCATGATATATTGT
CCAAATATAATTGACTCCACAGTTGCTTTGTTTTTGTCTGCCTGTTTGGG
TGGTGGTTGTTTGGTTATAGTTATTTTGTCCTTTATTTGACTTTTTTTTC
ATTCAGGTTTGGTTTTATTTTTCTTGGTTTTTTGTATTTTTTTCTTGTAT
TGGATTTTTGTTTTTAGAGAAAGAACTAAAAGGTAGATAGGTAGGGAGGG
ATAGAGGATCTGGAAAGGGGAAGAATATGATCTACCAGCTTCAATGCTCT
GTCATAGTGGGAAGCCATTGCTTATGCAGGATTCTGGGATTGTCCATTAC
CTGGACTTTCTATTTTCTATTTTTCTGAGGGTCTCATAGACCAGGATTAT
TTTAAACATGCCTTTATAGCAGAGGCAAACCTTTTTATTCTTGACCCTCT
TTGCCTCTACCCTTTTAAATTTCTGGGATTATACATGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_g08.g1 MSMg01no546_g08.g1 CHROMAT_FILE:
MSMg01no546_g08.g1 PHD_FILE: MSMg01no546_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:40 2005
         (504 letters)



>mm_chrX_15924952_15925855
          Length = 904

 Score =  861 bits (445), Expect = 0.0
 Identities = 454/457 (99%), Gaps = 1/457 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaattcttaggcaaatggatgtattttattttattttattactttaaatgaatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 attaaattcttaggcaaatggatgtattttattttattttattactttaaatgaatgaaa 398

                                                                       
Query: 61  cagaatgaaaaattaaggtaactgtcatttatacttgccacaagaaggaaaaccagtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagaatgaaaaattaaggtaactgtcatttatacttgccacaagaaggaaaaccagtttt 338

                                                                       
Query: 121 ctccaatagagtgacactgattaatcaatgattccaggtcacacctcatgatatattgtc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 337 ctccaatagagtgacactgattaatcaatgattctaggtcacacctcatgatatattgtc 278

                                                                       
Query: 181 caaatataattgactccacagttgctttgtttttgtctgcctgtttgggtggtggttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 caaatataattgactccacagttgctttgtttttgtctgcctgtttgggtggtggttgtt 218

                                                                       
Query: 241 tggttatagttattttgtcctttatttgac-ttttttttcattcaggtttggttttattt 299
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 217 tggttatagttattttgtcctttatttgactttttttttcattcaggtttggttttattt 158

                                                                       
Query: 300 ttcttggttttttgtatttttttcttgtattggatttttgtttttagagaaagaactaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ttcttggttttttgtatttttttcttgtattggatttttgtttttagagaaagaactaaa 98

                                                                       
Query: 360 aggtagataggtagggagggatagaggatctggaaaggggaagaatatgatctaccagct 419
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  agctagataggtagggagggatagaggatctggaaaggggaagaatatgatctaccagct 38

                                                
Query: 420 tcaatgctctgtcatagtgggaagccattgcttatgc 456
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  tcaatgctctgtcatagtgggaagccattgcttatgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)