BAC Information

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BAC

Clone NameMSMg01-547M10
ChromosomeX (Build37)
Map Location 23,208,109 - 23,382,769
singlet/doubletdoublet
Overlap geneWdr44
Upstream geneKlhl13, EG635719
Downstream geneEG236749, EG214450, EG245376, LOC546271, LOC100043957, LOC100043206, LOC669000, LOC629204, EG546272, LOC100043216, EG546282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547M10.T7 (MSMg01no547_m10.b1)MSMg01-547M10.TJ (MSMg01no547_m10.g1)
ACCAG612281AG612282
length762748
length of high quality
(start - end)		711 (34 - 744)606 (62 - 667)
definitionCHROMAT_FILE: MSMg01no547_m10.b1 PHD_FILE: MSMg01no547_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:30 2005CHROMAT_FILE: MSMg01no547_m10.g1 PHD_FILE: MSMg01no547_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,382,063 - 23,382,769)(23,208,109 - 23,208,491)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTACAT
AGAAACATTGTGCTCCAGTGTGGCAAAGAAAAAAATTATATATATATACA
CTTACAAAGTAAAGAATAAGTCCACAATTTAGATCACAAAAAAAATCTTG
TCCCCAAATTGAGAAATTTATAAAAAACCATTTACACATGGTTATTGACC
TATTGAAAACCTATATAACATTTCAAAACAATAATTCAGTCAAAAGATAC
ATTTCTTAAAAACGAAATTTTGTGCAAAAAAATTTTTTAGAACTAGAAGC
AAGACCACCTCACCCAGTAGGAGGCCAAAAGAGCCACCAAAATAATTTAA
CTTTGTTAGATTTAGTGCATGTAACCAAAAGGCACGCACATGTGATTAAT
ATATTAATATCTTTTCATGCAGAAACCTGTGCATGTTTATAATTATATAA
CAAAACATAAACATAACAAAACATAAACTCTATGCTTGGCAATGTTAATC
TAACCACATTCTTTTCTAGTCTATCAGTCTAGGAGTTCCTAGATCACTAA
CACTGCCTCTCAAAAAATATATATTATATTTGAACAACTTTCAATAAAAG
CTAAAAAGGGATGTTAGCCTGAAACACTATAATACTTTTCTCATTTATGA
TACATATAGAAACTTACTGATATGTTTATTTTAAATATAATTTCAAATTA
AGATACAGTTTTCCTTTTGTTAATAAACACTTTGATTGCTCCAGTAAAAT
CAGCAGAAAGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGG
TGATGGGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAA
ACGTCATGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATC
TTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGT
TGCGTCTTTCTTGCCGGTCGAGCGGGACACAATAAGTTTTCTCTCAAACT
ATAATAAAAATATGTCCTGAACTTCCTTCTGAGTCCATTATAAATTTATC
AACAAGACTAAGAATTCACTAAAGGGAACTTGATGACATTTCAAACACTG
AATTATCTCTCACCAACAAACCACTACTAAAAGATATTCTAATGAATATG
CTTAGGAACAATGAGCCCAGAAGGGAAAGACAGATTTAAGAAGGAATGAC
TTGTAAAGAAATTAGAAGACATTGTCAATGGCAACGAACATTGGTTATTT
GAAACAATATCTTATAATCTGGATAAGGAAGAAGGAAGAGATAGTTCCTT
ATAGGAAGTAAGGACAGATCCCATGGTAGGTCGTACATTACTCACATTAC
TAACATAAATGATAGTCAACAAAATCAATAAAATAAATAGAAGAGTAGAC
AGAGGTGACCATGACAACCTGATTGGAAGATAATACAGTCAGTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_m10.b1 MSMg01no547_m10.b1 CHROMAT_FILE:
MSMg01no547_m10.b1 PHD_FILE: MSMg01no547_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:30 2005
         (711 letters)



>mm_chrX_23381859_23382969
          Length = 1111

 Score = 1359 bits (703), Expect = 0.0
 Identities = 706/707 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttacatagaaacattgtgctccagtgtggcaaagaaaaaaattatatatatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 gaattctttacatagaaacattgtgctccagtgtggcaaagaaaaaaattatatatatat 852

                                                                       
Query: 65  acacttacaaagtaaagaataagtccacaatttagatcacaaaaaaaatcttgtccccaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 acacttacaaagtaaagaataagtccacaatttagatcacaaaaaaaatcttgtccccaa 792

                                                                       
Query: 125 attgagaaatttataaaaaaccatttacacatggttattgacctattgaaaacctatata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 attgagaaatttataaaaaaccatttacacatggttattgacctattgaaaacctatata 732

                                                                       
Query: 185 acatttcaaaacaataattcagtcaaaagatacatttcttaaaaacgaaattttgtgcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 acatttcaaaacaataattcagtcaaaagatacatttcttaaaaacgaaattttgtgcaa 672

                                                                       
Query: 245 aaaaattttttagaactagaagcaagaccacctcacccagtaggaggccaaaagagccac 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaaaattttttagaactagaaacaagaccacctcacccagtaggaggccaaaagagccac 612

                                                                       
Query: 305 caaaataatttaactttgttagatttagtgcatgtaaccaaaaggcacgcacatgtgatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caaaataatttaactttgttagatttagtgcatgtaaccaaaaggcacgcacatgtgatt 552

                                                                       
Query: 365 aatatattaatatcttttcatgcagaaacctgtgcatgtttataattatataacaaaaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aatatattaatatcttttcatgcagaaacctgtgcatgtttataattatataacaaaaca 492

                                                                       
Query: 425 taaacataacaaaacataaactctatgcttggcaatgttaatctaaccacattcttttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 taaacataacaaaacataaactctatgcttggcaatgttaatctaaccacattcttttct 432

                                                                       
Query: 485 agtctatcagtctaggagttcctagatcactaacactgcctctcaaaaaatatatattat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agtctatcagtctaggagttcctagatcactaacactgcctctcaaaaaatatatattat 372

                                                                       
Query: 545 atttgaacaactttcaataaaagctaaaaagggatgttagcctgaaacactataatactt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atttgaacaactttcaataaaagctaaaaagggatgttagcctgaaacactataatactt 312

                                                                       
Query: 605 ttctcatttatgatacatatagaaacttactgatatgtttattttaaatataatttcaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttctcatttatgatacatatagaaacttactgatatgtttattttaaatataatttcaaa 252

                                                          
Query: 665 ttaagatacagttttccttttgttaataaacactttgattgctccag 711
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttaagatacagttttccttttgttaataaacactttgattgctccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no547_m10.g1 MSMg01no547_m10.g1 CHROMAT_FILE:
MSMg01no547_m10.g1 PHD_FILE: MSMg01no547_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:30 2005
         (606 letters)



>mm_chrX_23207686_23208691
          Length = 1006

 Score =  741 bits (383), Expect = 0.0
 Identities = 383/383 (100%)
 Strand = Plus / Plus

                                                                       
Query: 224 agttttctctcaaactataataaaaatatgtcctgaacttccttctgagtccattataaa 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agttttctctcaaactataataaaaatatgtcctgaacttccttctgagtccattataaa 483

                                                                       
Query: 284 tttatcaacaagactaagaattcactaaagggaacttgatgacatttcaaacactgaatt 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tttatcaacaagactaagaattcactaaagggaacttgatgacatttcaaacactgaatt 543

                                                                       
Query: 344 atctctcaccaacaaaccactactaaaagatattctaatgaatatgcttaggaacaatga 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atctctcaccaacaaaccactactaaaagatattctaatgaatatgcttaggaacaatga 603

                                                                       
Query: 404 gcccagaagggaaagacagatttaagaaggaatgacttgtaaagaaattagaagacattg 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gcccagaagggaaagacagatttaagaaggaatgacttgtaaagaaattagaagacattg 663

                                                                       
Query: 464 tcaatggcaacgaacattggttatttgaaacaatatcttataatctggataaggaagaag 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tcaatggcaacgaacattggttatttgaaacaatatcttataatctggataaggaagaag 723

                                                                       
Query: 524 gaagagatagttccttataggaagtaaggacagatcccatggtaggtcgtacattactca 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaagagatagttccttataggaagtaaggacagatcccatggtaggtcgtacattactca 783

                                  
Query: 584 cattactaacataaatgatagtc 606
           |||||||||||||||||||||||
Sbjct: 784 cattactaacataaatgatagtc 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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