Query= MSMg01no547_p17.b1 MSMg01no547_p17.b1 CHROMAT_FILE:
MSMg01no547_p17.b1 PHD_FILE: MSMg01no547_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:46 2005
(704 letters)
>mm_chrX_80357365_80358468
Length = 1104
Score = 1338 bits (692), Expect = 0.0
Identities = 698/700 (99%)
Strand = Plus / Minus
Query: 5 gaattcacacatggaaaaaaagggaattttaaaatacaatgggaaaggaactgaaaataa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gaattcacacatggaaaaaaagggaattttaaaatacaatgggaaaggaactgaaaataa 845
Query: 65 ccagttcagcaaagatcagtaaaagaaccaatacttgagcaatgaagaacattattgatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ccagttcagcaaagatcagtaaaagaaccaatacttgagcaatgaagaacattattgatc 785
Query: 125 agtaaagtaatatgaaaggaaaaagaggtgtatgttaacttgggtgctaaatttagacaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 agtaaagtaatatgaaaggaaaaagaggtgtatgttaacttgggtgctaaatttagacaa 725
Query: 185 ctattcattgattaagacataaaatttctagaaaagaatgttctttggggataaaaaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 724 ctattcattgattaagacataaaatttctagaaaagaatgttctttggggataaaaatat 665
Query: 245 tagcctgtatggagatctttcactactgaataactgaactgtggagtcaaagtaaaaata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tagcctgtatggagatctttcactactgaataactgaactgtggagtcaaagtaaaaata 605
Query: 305 aagtgaattagagtcagtatgatgcaagataaagcaggaaaaaaatctctgtgttattga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aagtgaattagagtcagtatgatgcaagataaagcaggaaaaaaatctctgtgttattga 545
Query: 365 tcatagagcttcataaaatgctgatgccagtgaattttcaagataaataattacccaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcatagagcttcataaaatgctgatgccagtgaattttcaagataaataattacccaaat 485
Query: 425 ttaaacctagagaaaaccttggtattggtgacacaagtcatgagattgggactttcatgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttaaacctagagaaaaccttggtattggtgacacaagtcatgagattgggactttcatgt 425
Query: 485 ttcctttgctttctcccttattttacctccattgcattattaattagatacacattagtc 544
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 424 ttcctttgctttctcccttattttacctccattgcactattaattagatacacattagtc 365
Query: 545 atttaaactgaaaagtagaggtttctgaggattttaaaagacaatttatgtaaatatatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atttaaactgaaaagtagaggtttctgaggattttaaaagacaatttatgtaaatatatt 305
Query: 605 actgtatatgtccccctccaaatagaaaactaacttttttcataagttatgaaagaatat 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 actgtatatgtccccctccaaatagaaaactaacttttttcataagttatgaaagaatat 245
Query: 665 ataaactaactatttttctagttccaattctctcatggca 704
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ataaactaactatttttctagttccaattctctcatggca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no547_p17.g1 MSMg01no547_p17.g1 CHROMAT_FILE:
MSMg01no547_p17.g1 PHD_FILE: MSMg01no547_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:46 2005
(674 letters)
>mm_chrX_80191434_80192509
Length = 1076
Score = 1232 bits (637), Expect = 0.0
Identities = 666/677 (98%), Gaps = 4/677 (0%)
Strand = Plus / Plus
Query: 1 actttgtagaccaggcgggccttgaactcagaaatccgcctgcctctgcctccctagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaggcgggccttgaactcagaaatccgcctgcctctgcctccctagtgc 260
Query: 61 tggcattaaaggcgtgcaccaccacgctcggctaaaatatattttttaaaaaatattctt 120
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 261 tggcattaaaggcgtgcaccaccacgcccggctaaaatatatttttaaaaaaatattctt 320
Query: 121 aaaagtaaacaaagcttttaagatgcaaggaatagacaattgttattagttcctattcca 180
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 321 aaaagtaaacaaagcttttaagatgcaagaaatagacaattgttattagttcatattcca 380
Query: 181 aaaatactaaactataaaaatacattaaaaatagatgttagcaaattttataccttttac 240
|||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 381 aaaatactaaactataaaaataca-taaaaattgatgttagcaaatgttataccttttac 439
Query: 241 ttcataaatacctgaataattcaaagtattcccatcttgaaattataaggagttcttgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcataaatacctgaataattcaaagtattcccatcttgaaattataaggagttcttgca 499
Query: 301 tctcagcagtaaaataacaaatacatgacaagcctcagttacacaactaaagaatgggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctcagcagtaaaataacaaatacatgacaagcctcagttacacaactaaagaatgggca 559
Query: 361 aatgtatgtatagacactgttttgaagtgtttattcaggagtaagagaaaatgatgagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatgtatgtatagacactgttttgaagtgtttattcaggagtaagagaaaatgatgagct 619
Query: 421 ggtaattaatgtgaaattttacttaaagaagttgaataaattctggatctctaccataag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggtaattaatgtgaaattttacttaaagaagttgaataaattctggatctctaccataag 679
Query: 481 atactacaacagaagtccatcataccatagtatatgcttaaacattttaagagaataaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atactacaacagaagtccatcataccatagtatatgcttaaacattttaagagaataaat 739
Query: 541 cgaaaatactttaccccataaactacagtttcaaaaaggtacattgagagttatttaata 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctaaaatactttaccccataaactacagtttcaaaaaggtacattgagagttatttaata 799
Query: 601 tcatc---cattagaaaatttgaagttatagctgtcatgatattttcctacatctttgaa 657
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcatcatccattagaaaatttgaagttatagctgtcatgatattttcctacatctttgaa 859
Query: 658 ataaaaaataatcagaa 674
|||||||||||||||||
Sbjct: 860 ataaaaaataatcagaa 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1076
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1066
Effective search space: 707824
Effective search space used: 707824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
