BAC Information

Click to search

BAC

Clone NameB6Ng01-001B07
ChromosomeY (Build37)
Map Location 373,813 - 486,864
singlet/doubletdoublet
Overlap geneTspy-ps, Uty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001B07.bB6Ng01-001B07.g
ACCDH839501DH839502
length1,1071,140
definitionDH839501|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B07, 5' end.DH839502|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(485,732 - 486,864)(373,813 - 374,965)
sequence
gaattctcaaaaagaaaaaccaaatggtatttttaatagttcaaaccatc
catagttatagaagaaatataaattattttaaccttattctgaatgcctc
caatcaaaacaaaacaaaaacccatataatatcaaatgtttgtaaagaat
cagaagaatgggaaacccttgttaatttttgctaggactgaaaacttgat
ccttatggaaatcaatgcagaggttctgccagaaaagaaaagaccaataa
cagttgaaaactaaaaagaatttccctatgagcagcaataccatttttgt
catataagacaatattgaattagagacatatttgtacacctacacttatc
acagcatcaaataagtagaatcagctaagatatctagtactggtaaatat
ataatgaaaatattgtgtatatgaattttatttcactcttaagaaaacac
cctaactttaggaaatgcccactaaaaaatgaatagaactgaaaaaatat
cctgagtgaagttattgtgtgttatcaatggagattaggtaggaactttg
aaaaggactttggtttgtgggtggttgaggggtgttagcattagaactac
attgcttactagagtagaaataggaatatagggtaaagaaatgtttaagg
gtagggatagctgctgcataattgggaagcagactttgtaaacatgtcaa
cccaaaccaaaggatatgaaaagttcaggtggaaacatactattctctaa
gtcgttaataaatataatactttttaaaagattgaataaaagtacccttc
atgtgttattagtgctgtcattagccataagttatgaaataaaaaatttt
aattccaggccagtattatatccctgacttgttagacatcatacactgta
ttttgatcatgtttcccccttacccagtttccacatgtcctcttagtctt
cctattacatccaagttgtctccttctcccttattccctctctctctaca
taccacaccaacaaaaaaacttacttgaataacaagtgaggacactagat
ttaaaaaaaatggctcaatagttgtaatgggccacttctcagaatgtgtc
tactttg
gaattcattgatgacttaacagtctgtagtccagttcccaacaatggttc
agcagcagctgtgaatggtagtccaaggatctagcagttgttcagtccca
catggcaagcaggctaaagagcaagactcccttcttccaatgtccttata
tggtctcctgcagaaggtgtagcccagattaaaagggtgtgtcagtgtga
gtgccaccacacctttaatcccagatgatcttgaactctgagatcttcct
gtcttcaagatccagaacttctatctcccagcctccagattagggtcact
ggtgagcattccaattctggattgtagttcatttcaaatatagtcaagtt
gacaaccaggaatagccagtacatcatgtaagtttatttaaaagttttga
gtacaaaacaattccttggaacatacagtctttggctctgcatatcccaa
taattatacataagaagcatgttacccacatttaactcacctgaattcac
tgagaacaaataatgcctcaacttaatttaaacaaatgccttgcacaaga
ggacttgccaaatataaatataagctgataattattttactaaaaatccg
agttgggaatgtaaaaacttacagtggggcctggtagaacaggactttaa
tatcagttactcagtgctggtgacaccccatattaaactcattatgcctg
ggactcctaatgacaaggaaaaaaacctgccggaggtactgtgtttcaga
atgtgagacactgtcctcttgtggacccagtatgagtactgagaggaccc
aaggcctgcttcgttggtgcaagcaccttgtgatgtcatttttgccagtg
ttcttagtacttatcattcttatctatttgctgctccttctctttccttc
ttccttgattaaaccagtatttggtgacctgtcaagacctagtaggagac
agcttaatatccaggttttagatgttgccaatatattaaagtgaaggctg
cccatgaattcaggagaaatatatgttatggtcactccaccctaggttag
aaaggaaggtagctagcgaccatgcaagatgacttatcttacagctgttc
cagtcttagcttcatcgtgataaaaaggtgacttttatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_485732_486864
seq2: B6Ng01-001B07.b_47_1153 (reverse)

seq1  CAAAGTAGACACCATGTCTTGAGAAGTGGCCCATATACAACTTATTTGAG  50
      ||||||||||| ||| || ||||||||||||||| |||||||   |||||
seq2  CAAAGTAGACA-CAT-TC-TGAGAAGTGGCCCAT-TACAACT--ATTGAG  44

seq1  CATTTTTTTTTTAAATCTTAGTGTTCCTTCACTTGTTTATTTCAATGTAA  100
      |   ||||||||||||| ||||||  | |||||||||   ||||| ||||
seq2  C-CATTTTTTTTAAATC-TAGTGT--CCTCACTTGTT--ATTCAA-GTAA  87

seq1  GTTTTTTTTTGTTTTGGTTGTGTGTATGTAAGAGAGAGGAGGGGAATAAG  150
      |  ||||||||||   | |||| |||||| ||||||||   |||||||||
seq2  G--TTTTTTTGTT---GGTGTG-GTATGT-AGAGAGAG--AGGGAATAAG  128

seq1  GGAGGAAGGGAGACAAACTTGGATGTAAATAGGAAGACTAAGAGGACATG  200
      ||||  | |||||| ||||||||||| |||||||||||||||||||||||
seq2  GGAG--AAGGAGAC-AACTTGGATGT-AATAGGAAGACTAAGAGGACATG  174

seq1  GTGAAACTGGGTAAGGGGGAAACATGATCAAAATACAGTGTATGATGTCT  250
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTGGGTAAGGGGGAAACATGATCAAAATACAGTGTATGATGTCT  224

seq1  AACAAGTCAGGGATATAATACTGGCCTGGAATTAAAATTTTTTATTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTCAGGGATATAATACTGGCCTGGAATTAAAATTTTTTATTTCAT  274

seq1  AACTTATGGCTAATGACAGCACTAATAACACATGAAGGGTACTTTTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGGCTAATGACAGCACTAATAACACATGAAGGGTACTTTTATTC  324

seq1  AATCTTTTAAAAAGTATTATATTTATTAACGACTTAGAGAATAGTATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTAAAAAGTATTATATTTATTAACGACTTAGAGAATAGTATGTT  374

seq1  TCCACCTGAACTTTTCATATCCTTTGGTTTGGGTTGACATGTTTACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGAACTTTTCATATCCTTTGGTTTGGGTTGACATGTTTACAAAG  424

seq1  TCTGCTTCCCAATTATGCAGCAGCTATCCCTACCCTTAAACATTTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCCAATTATGCAGCAGCTATCCCTACCCTTAAACATTTCTTTA  474

seq1  CCCTATATTCCTATTTCTACTCTAGTAAGCAATGTAGTTCTAATGCTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATTCCTATTTCTACTCTAGTAAGCAATGTAGTTCTAATGCTAAC  524

seq1  ACCCCTCAACCACCCACAAACCAAAGTCCTTTTCAAAGTTCCTACCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCAACCACCCACAAACCAAAGTCCTTTTCAAAGTTCCTACCTAAT  574

seq1  CTCCATTGATAACACACAATAACTTCACTCAGGATATTTTTTCAGTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGATAACACACAATAACTTCACTCAGGATATTTTTTCAGTTCTA  624

seq1  TTCATTTTTTAGTGGGCATTTCCTAAAGTTAGGGTGTTTTCTTAAGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTTAGTGGGCATTTCCTAAAGTTAGGGTGTTTTCTTAAGAGTG  674

seq1  AAATAAAATTCATATACACAATATTTTCATTATATATTTACCAGTACTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATTCATATACACAATATTTTCATTATATATTTACCAGTACTAG  724

seq1  ATATCTTAGCTGATTCTACTTATTTGATGCTGTGATAAGTGTAGGTGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTAGCTGATTCTACTTATTTGATGCTGTGATAAGTGTAGGTGTAC  774

seq1  AAATATGTCTCTAATTCAATATTGTCTTATATGACAAAAATGGTATTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTCTCTAATTCAATATTGTCTTATATGACAAAAATGGTATTGCT  824

seq1  GCTCATAGGGAAATTCTTTTTAGTTTTCAACTGTTATTGGTCTTTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAGGGAAATTCTTTTTAGTTTTCAACTGTTATTGGTCTTTTCTTT  874

seq1  TCTGGCAGAACCTCTGCATTGATTTCCATAAGGATCAAGTTTTCAGTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAGAACCTCTGCATTGATTTCCATAAGGATCAAGTTTTCAGTCCT  924

seq1  AGCAAAAATTAACAAGGGTTTCCCATTCTTCTGATTCTTTACAAACATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAATTAACAAGGGTTTCCCATTCTTCTGATTCTTTACAAACATTT  974

seq1  GATATTATATGGGTTTTTGTTTTGTTTTGATTGGAGGCATTCAGAATAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATATGGGTTTTTGTTTTGTTTTGATTGGAGGCATTCAGAATAAG  1024

seq1  GTTAAAATAATTTATATTTCTTCTATAACTATGGATGGTTTGAACTATTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATAATTTATATTTCTTCTATAACTATGGATGGTTTGAACTATTA  1074

seq1  AAAATACCATTTGGTTTTTCTTTTTGAGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  AAAATACCATTTGGTTTTTCTTTTTGAGAATTC  1107

seq1: chrY_373813_374965
seq2: B6Ng01-001B07.g_68_1207

seq1  GAATTCATTGATGACTTAACAGTCTGTAGTCCAGTTCCCAACAATGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATGACTTAACAGTCTGTAGTCCAGTTCCCAACAATGGTTC  50

seq1  AGCAGCAGCTGTGAATGGTAGTCCAAGGATCTAGCAGTTGTTCAGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCTGTGAATGGTAGTCCAAGGATCTAGCAGTTGTTCAGTCCCA  100

seq1  CATGGCAAGCAGGCTAAAGAGCAAGACTCCCTTCTTCCAATGTCCTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAAGCAGGCTAAAGAGCAAGACTCCCTTCTTCCAATGTCCTTATA  150

seq1  TGGTCTCCTGCAGAAGGTGTAGCCCAGATTAAAAGGGTGTGTCAGTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCTGCAGAAGGTGTAGCCCAGATTAAAAGGGTGTGTCAGTGTGA  200

seq1  GTGCCACCACACCTTTAATCCCAGATGATCTTGAACTCTGAGATCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCACACCTTTAATCCCAGATGATCTTGAACTCTGAGATCTTCCT  250

seq1  GTCTTCAAGATCCAGAACTTCTATCTCCCAGCCTCCAGATTAGGGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAGATCCAGAACTTCTATCTCCCAGCCTCCAGATTAGGGTCACT  300

seq1  GGTGAGCATTCCAATTCTGGATTGTAGTTCATTTCAAATATAGTCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCATTCCAATTCTGGATTGTAGTTCATTTCAAATATAGTCAAGTT  350

seq1  GACAACCAGGAATAGCCAGTACATCATGTAAGTTTATTTAAAAGTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCAGGAATAGCCAGTACATCATGTAAGTTTATTTAAAAGTTTTGA  400

seq1  GTACAAAACAATTCCTTGGAACATACAGTCTTTGGCTCTGCATATCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAACAATTCCTTGGAACATACAGTCTTTGGCTCTGCATATCCCAA  450

seq1  TAATTATACATAAGAAGCATGTTACCCACATTTAACTCACCTGAATTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATACATAAGAAGCATGTTACCCACATTTAACTCACCTGAATTCAC  500

seq1  TGAGAACAAATAATGCCTCAACTTAATTTAAACAAATGCCTTGCACAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAAATAATGCCTCAACTTAATTTAAACAAATGCCTTGCACAAGA  550

seq1  GGACTTGCCAAATATAAATATAAGCTGATAATTATTTTACTAAAAATCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCCAAATATAAATATAAGCTGATAATTATTTTACTAAAAATCCG  600

seq1  AGTTGGGAATGTAAAAACTTACAGTGGGGCCTGGTAGAACAGGACTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGAATGTAAAAACTTACAGTGGGGCCTGGTAGAACAGGACTTTAA  650

seq1  TATCAGTTACTCAGTGCTGGTGACACCCCATATTAAACTCATTATGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTACTCAGTGCTGGTGACACCCCATATTAAACTCATTATGCCTG  700

seq1  GGACTCCTAATGACAAGGAAAAAAACCTGCCGGAGGTACTGTGTTTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTAATGACAAGGAAAAAAACCTGCCGGAGGTACTGTGTTTCAGA  750

seq1  ATGTGAGACACTGTCCTCTTGTGGACCCAGTATGAGTACTGAGAGGACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGACACTGTCCTCTTGTGGACCCAGTATGAGTACTGAGAGGACCC  800

seq1  AAGGCCTGCTTCGTTGGTGCAAGCACCTTGTGATGTCATTTTTGCCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGCTTCGTTGGTGCAAGCACCTTGTGATGTCATTTTTGCCAGTG  850

seq1  TTCTTAGTACTTATCATTCTTATCTATTTGCTGCTCCTTCTCTTTCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTACTTATCATTCTTATCTATTTGCTGCTCCTTCTCTTTCCTTC  900

seq1  TTCCTTGATTAAACCAGTATTTGGTGACCTGTCAAGACCTAGTAGGAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGATTAAACCAGTATTTGGTGACCTGTCAAGACCTAGTAGGAGAC  950

seq1  AGCTTAATATCCAGATATTAGATGTTGCCAATAATATTAAAGTGAAGGCT  1000
      |||||||||||||| | ||||||||||||||| |||||||||||||||||
seq2  AGCTTAATATCCAGGTTTTAGATGTTGCCAAT-ATATTAAAGTGAAGGCT  999

seq1  GCCCATGAATTCAAGAGAAATATATGTTATGGTCACTCCACCCTAGG-TA  1049
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GCCCATGAATTCAGGAGAAATATATGTTATGGTCACTCCACCCTAGGTTA  1049

seq1  GAAAAGAAAGTAGCCTAGCGACACATGCAGAGATGACTTAATCTACAGCT  1099
      |||| ||| |||| |||||||| |||||| ||||||||||   |||||||
seq2  GAAAGGAAGGTAG-CTAGCGAC-CATGCA-AGATGACTTATCTTACAGCT  1096

seq1  GTTTCCCCAGTCTTAGCTTCAATTCTGTATAATAAAAATGTGACATTTTT  1149
      |||   |||||||||||||||  ||    | ||||||| |||||  ||||
seq2  GTT---CCAGTCTTAGCTTCA--TC---GTGATAAAAAGGTGAC--TTTT  1136

seq1  ATTA  1153
      ||||
seq2  ATTA  1140