BAC Information

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BAC

Clone NameB6Ng01-001F14
ChromosomeY (Build37)
Map Location 2,028,598 - 2,029,537
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
Downstream geneLOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F14.g
ACCDH839698
length933
definitionDH839698|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatatgatgtcctgctatgaggagcaacagtcatatgggggtcct
gttacctgggtaactgtagagaactagggagttggtctgtcctcgctgcc
ttgagaggtatatgttaaaggtttttcacgttaaaacaggcagtgttgaa
gaagtagcatttgtctgtagaatgtggagatttgagtttgcttgtcccag
ggaatggtgctactaggaggtgctattacagcctagttggagtaggtgta
gccttgttgaaggaaatgtgtcactgtatgagtgggctttgagaccctcc
tcctagctgtctgaaaaacaatagtcttcttccttcctttggatcaagat
gtagaactctctgttccttcatctcccatctaaaagcactgacgtgcttc
ctaccttgatgatggtctgaacctgtaagccagtgccaactaaatgcttt
tctttataagtgttaccttggtcgtggtgtctgttcacagcaaaggaaaa
cctaagacagagaagttctacgaactttgttgctggaagcaggaggtaag
agggaagtcctcagttgataaaattcctggaatttattaaagaacttcag
tcatctttccctcaaaagaagttggtccttgttagaaaaccaaaaaacaa
tcaaacaaacaaaccaaaacaattcagagaatatttgatgcaaaggggcc
agaggaagttcctagtgatgcttttcattttacaaagaaagtaaacaata
ctagatttgacacacttaaactaatactgaaccaagaggtagtggtgcat
gtcttcaatccctgctctcatgaggcacatgcggaggatttctgagttga
ggccacctggtcttcagatgaagttccaagacatccaaggtatattttca
gagaaacctctttccaagcaccaccaccccaaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2028598_2029537
seq2: B6Ng01-001F14.g_67_999

seq1  GAATTCATAAGATGTCCTGCTATGAGGAGCAACAGTCATATGGGGGTCCT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGATGTCCTGCTATGAGGAGCAACAGTCATATGGGGGTCCT  50

seq1  GTTACCTGGGTAACTGTAGAGAACTAGGGAGTTGGTCTGTCCTCGCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGGGTAACTGTAGAGAACTAGGGAGTTGGTCTGTCCTCGCTGCC  100

seq1  TTGAGAGGTATATGTTAAAGGTTTTTCACGTTAAAACAGGCAGTGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGTATATGTTAAAGGTTTTTCACGTTAAAACAGGCAGTGTTGAA  150

seq1  GAAGTAGCATTTGTCTGTAGAATGTGGTGATTTGAGTATGCTTGTCCCAG  200
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  GAAGTAGCATTTGTCTGTAGAATGTGGAGATTTGAGTTTGCTTGTCCCAG  200

seq1  GGAATGGTGCTACTAGGAGGTGCTATTACAGCCTAGTTGGAGTAGGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTGCTACTAGGAGGTGCTATTACAGCCTAGTTGGAGTAGGTGTA  250

seq1  GCCTTGTTGAAGGAAATGTGTCACTGTATGAGTGGGCTTTGAGACCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTGAAGGAAATGTGTCACTGTATGAGTGGGCTTTGAGACCCTCC  300

seq1  TCCTAGCTGTCTGAAAAACAATAGTCTTCTTCCTTCCTTTGGATCAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTGTCTGAAAAACAATAGTCTTCTTCCTTCCTTTGGATCAAGAT  350

seq1  GTAGAACTCTCTGTTCCTTCCACTCCCATCTAAAAGCACTGACGTGCTTC  400
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GTAGAACTCTCTGTTCCTTCATCTCCCATCTAAAAGCACTGACGTGCTTC  400

seq1  CTACCTTGATGATGGTCTGAACCTGTAAGCCAGTGCCAACTAAATGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGATGATGGTCTGAACCTGTAAGCCAGTGCCAACTAAATGCTTT  450

seq1  TCTTTATAAGTGTTACCTTGGTCGTGGTGTCTGTTCACAGCAAAGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAGTGTTACCTTGGTCGTGGTGTCTGTTCACAGCAAAGGAAAA  500

seq1  CCTAAGACAGAGAAGTTCTACGAACTTTGTTGCTGGAGGAAGGAGGTAAG  550
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  CCTAAGACAGAGAAGTTCTACGAACTTTGTTGCTGGAAGCAGGAGGTAAG  550

seq1  AGGGAAGTCATCAGTTGATAAAATTCCTGGAATTTATTAGAGAACTTCAG  600
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  AGGGAAGTCCTCAGTTGATAAAATTCCTGGAATTTATTAAAGAACTTCAG  600

seq1  TCATCTTTCCCTCAAAAGAAGTTGGTCCTTGTTAGAAAACCAAAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCCCTCAAAAGAAGTTGGTCCTTGTTAGAAAACCAAAAAACAA  650

seq1  ACAAACAAACAAACCAAAACAATTCAGAGAATATTTGATGCAAAGGGGCC  700
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAACAAACCAAAACAATTCAGAGAATATTTGATGCAAAGGGGCC  700

seq1  AGAGGAAATTCCTAGTGATGCTTTTCAGTTTTGCAAAGAAAGGAAACAAT  750
      ||||||| ||||||||||||||||||| |||| ||||||||| |||||||
seq2  AGAGGAAGTTCCTAGTGATGCTTTTCA-TTTTACAAAGAAAGTAAACAAT  749

seq1  ACTAGATTTGACACAGTTAAAACTAAAACTGAACCAAGAGGTAGTGGTGC  800
      ||||||||||||||| || ||||||| |||||||||||||||||||||||
seq2  ACTAGATTTGACACACTT-AAACTAATACTGAACCAAGAGGTAGTGGTGC  798

seq1  ATGCCTTTAATCCCGGCACTCAGGAGGCACAGGCAGGAGGATTTCTGAGT  850
      ||| ||| |||||| || |||| |||||||| || |||||||||||||| 
seq2  ATGTCTTCAATCCCTGCTCTCATGAGGCACATGC-GGAGGATTTCTGAG-  846

seq1  TTGAGGCCAACCTGGTCTTCAGAGTGAGTTCCAAGACATCCAGAGCTATA  900
      |||||||| ||||||||||||||   |||||||||||||||| || ||||
seq2  TTGAGGCC-ACCTGGTCTTCAGATGAAGTTCCAAGACATCCA-AGGTATA  894

seq1  TATACAGAGAAACCCTCTCTCAATCCACCACCACCCCAAA  940
      | | |||||||| ||||| || |  |||||||||||||||
seq2  TTTTCAGAGAAA-CCTCTTTCCAAGCACCACCACCCCAAA  933