BAC Information

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BAC

Clone NameB6Ng01-002I20
ChromosomeY (Build37)
Map Location 577,507 - 577,665
singlet/doubletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002I20.bB6Ng01-002I20.g
ACCDH840540DH840541
length9861,194
definitionDH840540|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I20, 5' end.DH840541|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggacatccagggctatagaggaaccctatctaactatatata
taaaatccatatatacgtggacttatttctgggtcttcacttctattcca
ttgaatggcctatctatatatggaccaataaaatgtgttttttatttgct
tgtttgtttgtttggttgattgtttggctggtttttgttttgttttgttt
tattttgttttgttttgttttgatttgtcttcacaatagctctgtagtac
aggttgagtttaggggttataattactcgagtagttctttttctattaag
aatggatttttcacctgggcatggtggtgcatgcctttaatcccagcact
tgtgaggcagaggcaggagaatttcagagttcaagtccaacatggtcttg
aaagtcagttccaggacagccaaggctacacagagtaaccctgtctcgaa
aaaaccaaaaaaaaaaaaaaaaaaaaactgaaaacaaacaaacaaacaaa
caaaaaacaaaacaaaaaacaccaaaaaaaaaaaaccaaacaaacaaaaa
ataaacaaacgaaaaaaacgaattgatttttctattctgggtttttgttt
ttctatatgaagttgagaattgctctttcaacgtttgtgaagaactttgt
tggaatcttgatggtgattgcattgaatctattaattgctttaggtagga
tggccatatttactctgttaatcctacaaatctctgagttttggagttct
ctccattttttaagttcttcttcaagtctttcttaaaggacttgaagtta
ttgtcatatagatcctttcatttacttgataagtgttatatcaagattac
tttataggacttcttgcatattgtgaaggggtttgatttttttcttctca
gttttgtgtctcttgggcagatgaatttctacttattgtttgagtgaaat
tatatccagctactttgcttagttggtgtattagct
gaattcaagtcccttacctatacataataaaagcaatagacagcaaacca
gtagccaacatcaaaccaaatggagataaacttgaagcaatcccactgaa
atcacagacttggacaaggctgccctctctctcccaacctattcaatata
gtatttgaagtcctagacagaaaaattagacaataaaagtatgtcaaagg
gatacaaattggaaagaaagaagtcaaaatatcactgtttgcagatgata
atatatacgtatatatattagagacaccaaaaaatccacaagagaactcc
taaaactgataaacaacttcagtgatgtagcttgatataaaattaactga
aaaaaaaatcagtgccctttctctactcaaagcataaaaaggctgagaaa
gaaaatgtaaaaacaacaccctttacaatagtcacaaataatataaaata
tcttggtgtaactcaaactaaggaagtgaaaggtctgtatgataaggact
tcaagtctctgaagaaagaaatcaaagaagattacagaagatggaaagtt
ctcctatgctcatgggttggcaggattaatatagtaaaaatggttatctt
gccaaaagcaatctaaagatacaatccaatccccactaaaattccaactc
aattcttcacagttaaaaagggcaacttgcaaatacttgtgtcataacaa
aaatcctaagatagcaaaaactattcccaacaatataagaatctctggta
taatcaccatccctgacctcaagctatactacagaaaagatgaaatacaa
actgcattttattggtacattgacaggcaggtagatcaatggaatagaat
tgaagacacagaaatgaatccgcacacctatggtcacttgatctttgaca
aaggcagtaaaacaatccagtgtaaaaaagactatatttacaacaaatgg
tactggctcagctggtggtagcatgtagaagagaatgatccattctatct
cctgtacaaagctgcagtctagtgatcagtactcacataaaacacgatac
tgaaattagagcagagattgggaagagctcgaagaattggcaagggaaat
tctaagagaaaccatggatttactgtagaatcagttctcatgactctaaa
tgcagaattcttaaggcagaagaccgtgctcgattaagacacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_577507_577665
seq2: B6Ng01-002I20.b_362_521

seq1  GGCAGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGA-GCAG  49
      |||| ||||||||||||||||||||||||||||||| |||||||| ||||
seq2  GGCA-TGGTGGTGCATGCCTTTAATCCCAGCACTTGTGAGGCAGAGGCAG  49

seq1  ATGGATCTCTGAGTTTGAGGCTATCCTGGTCTACAGAGTGAGTTCCAGGA  99
        | || || |||||  || | | | ||||||  | ||| ||||||||||
seq2  GAGAATTTCAGAGTTCAAGTCCAACATGGTCTTGAAAGTCAGTTCCAGGA  99

seq1  CAGCTAGGACTACACAGAGAAACCCTGTCTTG-AAAAACCAAAAAAAAAA  148
      |||| | | |||||||||| |||||||||| | |||||||||||||||||
seq2  CAGCCAAGGCTACACAGAGTAACCCTGTCTCGAAAAAACCAAAAAAAAAA  149

seq1  AAAAAAAAAAA  159
      |||||||||||
seq2  AAAAAAAAAAA  160