BAC Information

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BAC

Clone NameB6Ng01-004I05
Chromosome8 (Build37)Y (Build37)
Map Location 38,907,253 - 38,907,632573,321 - 573,401
singlet/doubletsingletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004I05.bB6Ng01-004I05.g
ACCDH841900DH841901
length380481
definitionDH841900|Mus musculus domesticus DNA, BAC clone: B6Ng01-004I05, 5' end.DH841901|Mus musculus domesticus DNA, BAC clone: B6Ng01-004I05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,907,253 - 38,907,632)(573,321 - 573,401)
sequence
agggtatcattcttcagcaaatcatggactcttacaatactaatataacc
cgctaggtttaaagtctgaatcatggggattcttagtgggaacggacatt
taagaaatctaaaatgtaaagactcttcctacaatggtagttaagtcttt
attgtccttgagttggatttttgtatgcatggctgctggtaatcaatagc
ctgaggccacttcctcaccataagcaagcttttgaattttgtttgctcat
ttgtttgttttgtcttattctagtttgtttattttgttgcctgtttgttc
actaaagggatagtgtaagaaaggatgtagatttgggtagcttgggaggt
agggaaaatctgggagaattggggggaggg
gaattctttgtttagcgttgagccccatgttttaatgggattatttggtt
ttctggagtccaccttcttcagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggcct
ttttgtcttattgacggtgtcctttgccttacagaagttttgcaatttta
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttccccctgttcccatatcttcgaggcttttccccact
ttctcctctatagctgtctcttgtgagactatgtcagggcctagcaaaga
cagaattcgatgctcacagtcagctattggatggatcacagggccaccaa
tggaggagctagagaatgtatccaaggggctaaagggatctgcaacccta
taggtggaacaacaatatgaactaaccagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38907253_38907632
seq2: B6Ng01-004I05.b_54_433

seq1  AGGGTATCATTCTTCAGCAAATCATGGACTCTTACAATACTAATATAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATCATTCTTCAGCAAATCATGGACTCTTACAATACTAATATAACC  50

seq1  CGCTAGGTTTAAAGTCTGAATCATGGGGATTCTTAGTGGGAACGGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGGTTTAAAGTCTGAATCATGGGGATTCTTAGTGGGAACGGACATT  100

seq1  TAAGAAATCTAAAATGTAAAGACTCTTCCTACAATGGTAGTTAAGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATCTAAAATGTAAAGACTCTTCCTACAATGGTAGTTAAGTCTTT  150

seq1  ATTGTCCTTGAGTTGGATTTTTGTATGCATGGCTGCTGGTAATCAATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTTGAGTTGGATTTTTGTATGCATGGCTGCTGGTAATCAATAGC  200

seq1  CTGAGGCCACTTCCTCACCATAAGCAAGCTTTTGAATTTTGTTTGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCACTTCCTCACCATAAGCAAGCTTTTGAATTTTGTTTGCTCAT  250

seq1  TTGTTTGTTTTGTCTTATTCTAGTTTGTTTATTTTGTTGCCTGTTTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTGTCTTATTCTAGTTTGTTTATTTTGTTGCCTGTTTGTTC  300

seq1  ACTAAAGGGATAGTGTAAGAAAGGATGTAGATTTGGGTAGCTTGGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGGATAGTGTAAGAAAGGATGTAGATTTGGGTAGCTTGGGAGGT  350

seq1  AGGGAAAATCTGGGAGAATTGGGGGGAGGG  380
      ||||||||||||||||||||||||||||||
seq2  AGGGAAAATCTGGGAGAATTGGGGGGAGGG  380

seq1: chrY_573321_573401
seq2: B6Ng01-004I05.g_465_546

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||||||||||||||||| ||| |||||| ||||||||||||||||| |||
seq2  ATGGAGGAGCTAGAGAATGTATCCAAGGGGCTAAAGGGATCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTA  81
      |||| ||||||||||||||||| |||||||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTA  82