BAC Information

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BAC

Clone NameB6Ng01-004P06
ChromosomeY (Build37)10 (Build37)
Map Location 2,430,629 - 2,430,677104,054,110 - 104,054,739
singlet/doubletsingletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004P06.bB6Ng01-004P06.g
ACCDH842225DH842226
length188913
definitionDH842225|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P06, 5' end.DH842226|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,430,629 - 2,430,677)(104,054,110 - 104,054,739)
sequence
ataaaatatcttttcccattttgtagggtacccttttgatcagctgatga
ggtcttttcagtttcatgaggtctctctctctctctctctctctctctct
ctctctctctctctctctttttgtggtttctgcttacactatcagtgatc
tgttcagaaaattgtctccggtggcaatacatccaagg
gaattcaatttgatccattctcatctccttgtacaaagctcaagtctaag
tgaatcaaggaactccacataaaaccagcgacactgaaacttatagagga
gaaagtggaggaaagccttaaagatatggggacaggggaaatttttctga
acagaacaccaatggctgtgctgtaagatcaagaattgccaaatgggacc
tcataaaatcgcaaagcttctgtaaggcaaaagacactgtcaataagaca
aaaaggccaccaacagattgagaaaggatctttatcaatcctaaatcaga
taggggactaatttctaatacatacaaagaactcaagaggctggactcca
gaaaaatcaaataacccccttaaaaatggggcacagagctaaacaaagaa
ttctcacctgaggaataccgaatggctgaaaagcacctgaaaaaatgctc
aacatccttaatcatcaaggaaatgcaaatcaaaacaaccctgagattcc
acgtcacaccagtaagaatggctaagatcaaaaattcagatgacagcaaa
tgctggcaaggatgtggagaaagaggatcactcctccattgttggtggga
ttccaagtttgtacactctggaaatcagtctggaggttcctcagaaaggt
acttttaaatcacattaaaatcaaactgcctaacaaggcaggtcagttgg
tggcttcataatgttgtagagatggtccagtctttgtgagagcttgctcc
tcttctagactaccagagttctaagccaggtatctgtgttgggtagctca
caggtatctgaaaccccaattgcaaggaatctgccatgcctttgtcccat
attaacattgacccacatgcatatacataaatcaaatatctttttaaact
cacacacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2430629_2430677
seq2: B6Ng01-004P06.b_120_168

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  49
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  49

seq1: chr10_104054110_104054739
seq2: B6Ng01-004P06.g_91_715 (reverse)

seq1  TTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCA  50
      ||||||| ||||| |||||| |||||||||||    ||||||| | || |
seq2  TTTCTGAGGAACCTCCAGACTGATTTCCAGAG----TGTACAAACTTGGA  46

seq1  ATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGC  100
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ATCCCACCAACAATGGAGGAGTGATCCTCTTTCTCCACATCCTTGCCAGC  96

seq1  ATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGG  150
      || |||||||| ||||||||||||||||||||||||| |||||||||| |
seq2  ATTTGCTGTCATCTGAATTTTTGATCTTAGCCATTCTTACTGGTGTGACG  146

seq1  TGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGAATCTCAGGGTTGTTTTGATTTGCATTTCCTTGATGATTAAGGATGT  196

seq1  TGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGA  250
      ||| ||||||||||||||||| || |||||||||||||||||||||||||
seq2  TGAGCATTTTTTCAGGTGCTTTTCAGCCATTCGGTATTCCTCAGGTGAGA  246

seq1  ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATAGGGTTATTTGA-TTT  299
      |||||||||| || |||| |||||| |||||||  ||||||||||| |||
seq2  ATTCTTTGTTTAGCTCTGTGCCCCA-TTTTTAAGGGGGTTATTTGATTTT  295

seq1  TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC  349
      |||| |||||| | ||||||||||||| ||| | || || ||||||||||
seq2  TCTGGAGTCCAGCCTCTTGAGTTCTTTGTATGTATTAGAAATTAGTCCCC  345

seq1  TATCTGAATTAGGATAGGTAAAGATCCTTTCTCAATCTGTTGGTGGTCTT  399
      ||||||| ||||||| | |||||||||||||||||||||||||||| |||
seq2  TATCTGATTTAGGATTGATAAAGATCCTTTCTCAATCTGTTGGTGGCCTT  395

seq1  TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTAT  449
      |||||||||||||| |||||||||||||| |||||||||||| |||||||
seq2  TTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCGATTTTAT  445

seq1  GAGGTCCCATTTATCAACTCTCTATCTTACAGCACAAGCCATTGCTGTTC  499
      ||||||||||||  ||| |||  |||||||||||| |||||||| |||||
seq2  GAGGTCCCATTTGGCAATTCTTGATCTTACAGCAC-AGCCATTGGTGTTC  494

seq1  TATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACT  549
      | ||||| ||  |||||||||| ||||||||||  ||||||| | | |||
seq2  TGTTCAGAAAAATTTCCCCTGTCCCCATATCTTTAAGGCTTTCCTCCACT  544

seq1  TTTTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAAT  599
      || ||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  TTCTCCTCTATAAGTTTCAGTGTCGCTGGTTTTATGTGGAGTTCCTTGAT  594

seq1  CCACTTAGATTTTACCTTAGTACAAGGAGAT  630
       |||||||| || | ||| ||||||||||||
seq2  TCACTTAGACTTGAGCTTTGTACAAGGAGAT  625