BAC Information

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BAC

Clone NameB6Ng01-005M12
Chromosome13 (Build37)Y (Build37)
Map Location 28,777,389 - 28,778,128573,321 - 573,512
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005M12.bB6Ng01-005M12.g
ACCDH842824DH842825
length746494
definitionDH842824|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M12, 5' end.DH842825|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,777,389 - 28,778,128)(573,321 - 573,512)
sequence
gaattctccgttcatcatgaacatcgttatgaatatcatcatcttgggct
gtgaactgactgcttgaattcattgatatatagaaataaccccaaataac
tagaacttaaccattcgagtgattagcctttcttgcctgagcatctcttt
gagaacaaagtcatgtattgcaagaatatatacaaagctttatattgtgg
ggcatcgtttcctgggaatgtcctgggatgtatgtacattatgcctaacg
gcctgtggtgctgcttttctgaagctctgtataggaagggtaatgattaa
aaacatgagtgcatgaaaattcctcccccctcaaattaagacttaaatca
tctccattgtatgagaacatgggctacctgctctcccagagggtcagtac
tcaccacagggtgggggtggggattacctggatagtgtgtactgctgcca
cacaccctgagattccctgactcattccctgctccgtgccagtcacaagt
cctacaccatgagtggttttctgattactctggaatgaactagagatttg
ctttatcagaatgcctcattcagtatcaaggcctgatatcctttattgca
cttgcttttgtcagactaatttatataatatatagattgtttttgcttca
tcttatatatattttgtcacgtttggttgttatctcttggaaagccttat
tgttttctaatgagaagatgaaagagagtgggattggggggtgggg
tttgtttagctctgtaccccatttttaatggggttatttgaatttctgga
acaaaatacccatgaaaggagttacagagacaaagtttggagctaagatg
aaaggatggactattcagaaactaccccactcagggatccttcccataat
cagccaccaaacccagacactattgcatatgccagaaagattttgatgaa
gggaccctggtacagctgtcttgtatgaggccatgccagtgcctggcaaa
tatagaagtggatgctcacagtcatctataagatggaacacagggccccc
aatggagaagctagagaaagtacctaaggagctgaaggggtctgcaaccc
tataggtggaacagcagtatgacctaaccagtatccccagagcttgtgtc
tctagctgcatatgcagcagaagatggcctagtcggccatcactgggaag
agaggccccttggtattgcaaactttatatgccccagtacaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28777389_28778128
seq2: B6Ng01-005M12.b_44_789 (reverse)

seq1  CCCCA-CCCCCAAT-CCACTCTCTTTCATC-TCTCATTAGAAAACAAT-A  46
      ||||| |||||||| ||||||||||||||| ||||||||||||||||| |
seq2  CCCCACCCCCCAATCCCACTCTCTTTCATCTTCTCATTAGAAAACAATAA  50

seq1  GGC-TTCCAAGAGATAACAACCAAACGTGAC-AAATATATATAAGATGAA  94
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTTTCCAAGAGATAACAACCAAACGTGACAAAATATATATAAGATGAA  100

seq1  GCAAAAACAATCTATATATTATATAAATTAGTCTGACAAAAGCAAGTGCA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACAATCTATATATTATATAAATTAGTCTGACAAAAGCAAGTGCA  150

seq1  ATAAAGGATATCAGGCCTTGATACTGAATGAGGCATTCTGATAAAGCAAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGATATCAGGCCTTGATACTGAATGAGGCATTCTGATAAAGCAAA  200

seq1  TCTCTAGTTCATTCCAGAGTAATCAGAAAACCACTCATGGTGTAGGACTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTTCATTCCAGAGTAATCAGAAAACCACTCATGGTGTAGGACTT  250

seq1  GTGACTGGCACGGAGCAGGGAATGAGTCAGGGAATCTCAGGGTGTGTGGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGGCACGGAGCAGGGAATGAGTCAGGGAATCTCAGGGTGTGTGGC  300

seq1  AGCAGTACACACTATCCAGGTAATCCCCACCCCCACCCTGTGGTGAGTAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTACACACTATCCAGGTAATCCCCACCCCCACCCTGTGGTGAGTAC  350

seq1  TGACCCTCTGGGAGAGCAGGTAGCCCATGTTCTCATACAATGGAGATGAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTCTGGGAGAGCAGGTAGCCCATGTTCTCATACAATGGAGATGAT  400

seq1  TTAAGTCTTAATTTGAGGGGGGAGGAATTTTCATGCACTCATGTTTTTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTTAATTTGAGGGGGGAGGAATTTTCATGCACTCATGTTTTTAA  450

seq1  TCATTACCCTTCCTATACAGAGCTTCAGAAAAGCAGCACCACAGGCCGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACCCTTCCTATACAGAGCTTCAGAAAAGCAGCACCACAGGCCGTT  500

seq1  AGGCATAATGTACATACATCCCAGGACATTCCCAGGAAACGATGCCCCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAATGTACATACATCCCAGGACATTCCCAGGAAACGATGCCCCAC  550

seq1  AATATAAAGCTTTGTATATATTCTTGCAATACATGACTTTGTTCTCAAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGCTTTGTATATATTCTTGCAATACATGACTTTGTTCTCAAAG  600

seq1  AGATGCTCAGGCAAGAAAGGCTAATCACTCGAATGGTTAAGTTCTAGTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCAGGCAAGAAAGGCTAATCACTCGAATGGTTAAGTTCTAGTTA  650

seq1  TTTGGGGTTATTTCTATATATCAATGAATTCAAGCAGTCAGTTCACAGCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTATTTCTATATATCAATGAATTCAAGCAGTCAGTTCACAGCC  700

seq1  CAAGATGATGATATTCATAACGATGTTCATGATGAACGGAGAATTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGATGATATTCATAACGATGTTCATGATGAACGGAGAATTC  746

seq1: chrY_573321_573512
seq2: B6Ng01-005M12.g_377_569

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||| |||||||||||||||| |||||||| ||||| ||||||| |||
seq2  ATGGAGAAGCTAGAGAAAGTACCTAAGGAGCTGAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGA-ATAACCAGTATCCACAGAGCTCATGTCT  99
      |||| ||||||| || |||||  |||||||||||| |||||||  |||||
seq2  ATAGGTGGAACAGCAGTATGACCTAACCAGTATCCCCAGAGCTTGTGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||| | |||||||||||||||| |||||||| ||||||||
seq2  CTAGCTGCATATGCAGCAGAAGATGGCCTAGTCGGCCATCACTGGGAAGA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGG  192
      ||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGG  193