BAC Information

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BAC

Clone NameB6Ng01-005O24
ChromosomeY (Build37)2 (Build37)
Map Location 1,120,578 - 1,120,98658,400,652 - 58,400,688
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005O24.bB6Ng01-005O24.g
ACCDH842937DH842938
length823674
definitionDH842937|Mus musculus domesticus DNA, BAC clone: B6Ng01-005O24, 5' end.DH842938|Mus musculus domesticus DNA, BAC clone: B6Ng01-005O24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,578 - 1,120,986)(58,400,652 - 58,400,688)
sequence
gaattcctgaaaacactgaggacactctacccagggtgtccagaggcaac
cgcaaattttcacatatccctccactttttcaaggtttcattcttttttt
ttttttttccattttttattaggtatttaactcatttacatttccaatgc
tataccaaaagtcccccatatccacccacccccactcccctgcccaccca
ctccccctttttggccctggtattcccctgtactggggcatataaagttt
gcaagtccaatgggcctctctttccagtgatggccgactaggccatcttt
tgatatatatgcagctagagtcaagagctccggggtactggttagctcat
aatgttgttccacctatagggttgcagatccctttagctccttggctact
ttctctagctcctccattgggagccctatgatccatccattagctgactg
tgagcatccacttctgtgtttgctgggccccggcatagtctcacaagaga
cagctacatctgcgtcctttcaataaaatcttgctagtgtatgcaatggt
gtcagcgtttggatgctgattatggggtggatccctggctatggcagtct
ctacatggtccatcctttcatctcagctccaaactccgtctctgtaactc
cttccatgggtgtttttgttcccaaatctaaggaggggcatagtgtccac
actttcagtcttcattctccttgagtttcatgtgtttagcaaattatatc
ttatatcttgggtatcctagttttgggctaatatccactttatcagtgaa
tacatattgtgtgagtttctttg
gaattctttgtttagatttgttctccacttttaattgggttgttttaact
ctatatatttggatgttacctatttatttgatgtgtagttgacagaaaat
attttctcattctgtaggctgcttctttatctaatggtatcatttacata
aaaaacttttcattttcataggatcccatttattaatagtttttgttgtt
atctgtgccaatggcattctgttcataaagttcttttatgtgccaataag
tttaaggctattcttcactttctcttcatcatatttaatgtatctggcct
caggttcatgtgcttgacccactggaagttgatttttgtgcatggtgaga
gatgaattcatttggattcttattcacacagccattcaattgaccaccac
catttgtggaaaatgcagtcttttttacaatgtacatttccgacttattt
ataaaaacatagattctcataggtgtgtagatttatgtctgggtcatcaa
tttaattcacttaatcaatgtgtctgcttttaattcaataccatgctgat
ttttattattatttctttgtattgcaatttgaggtgaagatagcgatatg
tccagaagtactattgttagaatggatttaactgtcctcaggttttgtgg
tgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120578_1120986
seq2: B6Ng01-005O24.b_136_542

seq1  TTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACAT  50
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTT--TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACAT  48

seq1  TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT  98

seq1  GCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCAT  148

seq1  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  198

seq1  GCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG  248

seq1  TTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCC  300
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCC  298

seq1  TTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATT  348

seq1  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCT  398

seq1  CACAAGAGA  409
      |||||||||
seq2  CACAAGAGA  407

seq1: chr2_58400652_58400688
seq2: B6Ng01-005O24.g_710_742 (reverse)

seq1  CACACACACACATGTACACACACACACACCACAAAAC  37
      |||||||||||    ||||||||||||||||||||||
seq2  CACACACACAC----ACACACACACACACCACAAAAC  33