BAC Information

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BAC

Clone NameB6Ng01-006O16
ChromosomeY (Build37)17 (Build37)
Map Location 573,321 - 573,38092,913,200 - 92,914,373
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006O16.bB6Ng01-006O16.g
ACCDH843642DH843643
length4571,155
definitionDH843642|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O16, 5' end.DH843643|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,380)(92,913,200 - 92,914,373)
sequence
gaattcacaaaatatgtactcactgataagtggatattagcccagaaact
taagatacccaagatataagataaaatttgctaaacgcattaaactcaag
aacgaagaccaaagtgtagacactttgccccttcttagaattgggaacaa
aacatccatggaagaagttacagagacaaagtttggagctgtgacaaaag
gatggaccatctagagactgccatatccgggcatccatcccataatcagc
ttccaaaagctgacaccattgcatacactaacaagattttgctgaaagga
cccagatatagctgtttcttgtgagactatgcaggggcctagcaaacaca
gaagtggatgctcacaatcagctattggatggatcacaggacccccaatg
gaggagttagagaaagtatccaaggagctaaaggggtctgcaaccctata
ggtggaa
gaattcaagatgtaatagatgagagagtaaaattttaaattaaaagctaa
aatagtaaaaaataataactgttgtggtgggatgcagcatataaggctac
acagacaccggagcctgagacagtcaaatgaaatgtcagtgtaagtagac
aggcaaaatttaaaactaataattcatgtggtacaccaataccgagaata
tgtcatcttccagatttcaaagtctatcaggggccatgaaaaatatatta
tgaaaaaaggttatattctaagcttcaattctttgagacacaaaggaccc
acacaagtcaattcatgtaaacagggtattgagttcctgaaactaatggg
ttgctagaataactgagaggaagtctgtgaatagagactcacaatatttt
ccagactaattggctattacaaaatattttaattttcaaaaaactctctg
aaaataaaattgaaaaaaagacagcaaattagatacattttctataaaat
taaaatatctttacagatcaactatactgcctccttccattatcacagat
gttttatctttaatttcttgttttctttccttccctttcttcttccctcc
ttcctctttaaattctttcttcttctttttgttgttatattcactagaat
gcaaatgtacttatgcagaaaaagacattattggaggatggctgggcatg
ttaacattaatataattaatatagtactgtgttttgcctttactgaatgt
catacctttgtgatacctttctttttggtagacaaattaattttttttct
cagcatgacaagatgaatgtcagtgtttattgtttgaagccaatgtaatt
tgaaaaatgatgctagtgtactctacatgttctctctgatatctctagct
agtataaagttaacctcccaatttagctagtacaattaacatatacatat
tatttattttcttgtatgggatgatactatgtaccaaataaaataaaaag
gggtacttatggtgacgatgtctaacctacatgtggttttacttcaaatc
tatcttaaaatagcaacttttcagagaaagaaagaattgaatgcagtcat
aggtcgactctccatttccttctaaactctcccgagctgaatgcacattc
aattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573380
seq2: B6Ng01-006O16.b_447_506

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||||||||| ||||||||||| |||||||||||||||| ||||||| |||
seq2  ATGGAGGAGTTAGAGAAAGTATCCAAGGAGCTAAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAA  60
      |||| |||||
seq2  ATAGGTGGAA  60

seq1: chr17_92913200_92914373
seq2: B6Ng01-006O16.g_68_1222 (reverse)

seq1  GAATTGAATGGTGGCATTTCAGCCTCTGGGGGAGAG-TTAGAAGGAAAGG  49
      ||||||||||   ||| ||||| |||   ||||||| ||||||||||| |
seq2  GAATTGAATG--TGCA-TTCAG-CTC---GGGAGAGTTTAGAAGGAAATG  43

seq1  GGAAGATGTCGACCTATTGACCTGCATTTCAATTCTTTC-TTCTCATGAA  98
      |  ||| ||||||||| ||| ||||| |||||||||||| ||||| ||||
seq2  G--AGA-GTCGACCTA-TGA-CTGCA-TTCAATTCTTTCTTTCTC-TGAA  86

seq1  AAGTTGCTATTTTAAGGATAGAATTTTGAAGTAAAAACCACATGTAGGTT  148
      ||||||||||||||| ||||||  |||||||| |||||||||||||||||
seq2  AAGTTGCTATTTTAA-GATAGA--TTTGAAGT-AAAACCACATGTAGGTT  132

seq1  AGAACAATCTGTCA-CAT-AGTACCCCCTTTTTATTTTATTTTGGTACAT  196
      |||   ||| |||| ||| |||| ||||||||||||||| ||||||||||
seq2  AGA--CATC-GTCACCATAAGTA-CCCCTTTTTATTTTA-TTTGGTACAT  177

seq1  AGTATCATCCAATAACAAGAAAAATAAATAATATGTATATGTTAATTGTA  246
      |||||||||| || ||||| ||||||||||||||||||||||||||||||
seq2  AGTATCATCCCAT-ACAAG-AAAATAAATAATATGTATATGTTAATTGTA  225

seq1  CTAGCTAAATTGGGAGGTTAACTTTATACTAGCTAGAGATATCAGAGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAAATTGGGAGGTTAACTTTATACTAGCTAGAGATATCAGAGAGA  275

seq1  ACATGTAGAGTACACTAGCATCATTTTTC-AATTACATTGGCTTCAAACA  345
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACATGTAGAGTACACTAGCATCATTTTTCAAATTACATTGGCTTCAAACA  325

seq1  ATAAACACTGACATTCATCTTGTCATGCTGAG-AAAAAAATTAATTTGTC  394
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAAACACTGACATTCATCTTGTCATGCTGAGAAAAAAAATTAATTTGTC  375

seq1  TACCAAAAAGAAAGGTATCACAAAGGTATGACATTCAGTAAAGGCAAAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAAGAAAGGTATCACAAAGGTATGACATTCAGTAAAGGCAAAAC  425

seq1  ACAGTACTATATTAATTATATTAATGTTAACATGCCCAGCCATCCTCCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTATATTAATTATATTAATGTTAACATGCCCAGCCATCCTCCAA  475

seq1  TAATGTCTTTTTCTGCATAAGTACATTTGCATTCTAGTGAATATAACAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTTTTTCTGCATAAGTACATTTGCATTCTAGTGAATATAACAAC  525

seq1  AAAAAGAAGAAGAAAGAATTTAAAGAGGAAGGAGGGAAGAAGAAAGGGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGAAGAAAGAATTTAAAGAGGAAGGAGGGAAGAAGAAAGGGAA  575

seq1  GGAAAGAAAACAAGAAATTAAAGATAAAACATCTGTGATAATGGAAGGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAACAAGAAATTAAAGATAAAACATCTGTGATAATGGAAGGAG  625

seq1  GCAGTATAGTTGATCTGTAAAGATATTTTAATTTTATAGAAAATGTATCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATAGTTGATCTGTAAAGATATTTTAATTTTATAGAAAATGTATCT  675

seq1  AATTTGCTGTCTTTTTTTCAATTTTATTTTCAGAGAGTTTTTTGAAAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTGTCTTTTTTTCAATTTTATTTTCAGAGAGTTTTTTGAAAATT  725

seq1  AAAATATTTTGTAATAGCCAATTAGTCTGGAAAATATTGTGAGTCTCTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTGTAATAGCCAATTAGTCTGGAAAATATTGTGAGTCTCTAT  775

seq1  TCACAGACTTCCTCTCAGTTATTCTAGCAACCCATTAGTTTCAGGAACTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACTTCCTCTCAGTTATTCTAGCAACCCATTAGTTTCAGGAACTC  825

seq1  AATACCCTGTTTACATGAATTGACTTGTGTGGGTCCTTTGTGTCTCAAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTGTTTACATGAATTGACTTGTGTGGGTCCTTTGTGTCTCAAAG  875

seq1  AATTGAAGCTTAGAATATAACCTTTTTTCATAATATATTTTTCATGGCCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGCTTAGAATATAACCTTTTTTCATAATATATTTTTCATGGCCC  925

seq1  CTGATAGACTTTGAAATCTGGAAGATGACATATTCTCGGTATTGGTGTAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGACTTTGAAATCTGGAAGATGACATATTCTCGGTATTGGTGTAC  975

seq1  CACATGAATTATTAGTTTTAAATTTTGCCTGTCTACTTACACTGACATTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAATTATTAGTTTTAAATTTTGCCTGTCTACTTACACTGACATTT  1025

seq1  CATTTGACTGTCTCAGGCTCCGGTGTCTGTGTAGCCTTATATGCTGCATC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACTGTCTCAGGCTCCGGTGTCTGTGTAGCCTTATATGCTGCATC  1075

seq1  CCACCACAACAGTTATTATTTTTTACTATTTTAGCTTTTAATTTAAAATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACAACAGTTATTATTTTTTACTATTTTAGCTTTTAATTTAAAATT  1125

seq1  TTACTCTCTCATCTATTACATCTTGAATTC  1174
      ||||||||||||||||||||||||||||||
seq2  TTACTCTCTCATCTATTACATCTTGAATTC  1155