BAC Information

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BAC

Clone NameB6Ng01-008P18
ChromosomeY (Build37)18 (Build37)
Map Location 1,870,417 - 1,870,57670,022,151 - 70,023,351
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008P18.bB6Ng01-008P18.g
ACCDH845054DH845055
length2361,205
definitionDH845054|Mus musculus domesticus DNA, BAC clone: B6Ng01-008P18, 5' end.DH845055|Mus musculus domesticus DNA, BAC clone: B6Ng01-008P18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,417 - 1,870,576)(70,022,151 - 70,023,351)
sequence
gaattctttcaagtgtttttatttttttaaacataatcacaagtttttaa
aaataatcaagttttctgccttactgtaccccggagctcttgactctagc
tgcatatatatcaaaagatggcctagtcggccatcactgggaagagaggc
ccattggacttgcaaactttatatgccccagtacaggggaacaccagggc
caaaaagggggagtgggtgggcaggggagtgggggt
gaattcttttaggtacaaaagcctgctactttccactggatggactcagt
gggctcacactgtggctatgagattatgggatggctggatgctgactaat
tttgtcacctttaggaatttaacctcatgagcttcagcctcttgaactgt
atgtaatgataagacccagctcatgagagtcttaggagagttaagtaaag
cggttaaaccttgttggaggctggagaaatgaatcaacagttaagagcac
ttgctggtccttccgagttcctaggaatcagttcttagcacacacacact
acagctctgcctctctgtgttcttagcacacacacactacagctctgcct
ctctgtaactgtaacttcaggggatcggacaccgtcttctggcctctttg
ggtttctgcaatgcatatattatatataaatccatgaaacacatacacat
acaaacaataaacaagtcgtcttctctttcttctttacttttaaaattga
cctttatagattcagctagaaacagagcctaatcttattgtttcaacaaa
atgatctaatatagggaattgtcttcatctctctgtcctcagaggcctaa
atattagttcaataaattttgtgggtagaatgggtataatattttactat
tatatagtttcaaaatggaagggaccaaatttgaatctcggtaatgcgtc
ttcagactcgccattaacagtcatggctcaacttccaatcaaggagactt
tagaaaagtcacaaacagatttccagaaacacccaagaattgtttcggct
ggtgctacagaggcttaaccagtgtgcaacctttgatacttcctggtatc
tattttgtacatgccttgacagattccaaacccaggactttgccgctgac
ataatacaaacccttagactttggaactgtgtcatgatgcctgacttctc
agtcacagggatgcagtaacacaacaactgagctcttaagttcatggtac
ctaccctgccttcagaagacaatgctaccttgttttcagcctcccagaaa
acatcttctgaacggtgaaaaaacgccttcattctagtggattgggagtc
aaaattttctaagatgtttcttacatgcactggccacttgagggtgctat
tttaatcttacaatattccatctgctggagagagcacatggccatctcta
taata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870417_1870576
seq2: B6Ng01-008P18.b_118_277

seq1  TACCCCTGAGCTCTTGACTCTTGCTGCATAGGTATCAAAAGATGGCCTAG  50
      |||||| |||||||||||||| ||||||||  ||||||||||||||||||
seq2  TACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATGGCCTAG  50

seq1  TCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATATGC  100
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  TCGGCCATCACTGGGAAGAGAGGCCCATTGGACTTGCAAACTTTATATGC  100

seq1  CCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGCAGTGGGTGGGTAGGG  150
      |||||||||||||||| ||||||||||||||||| |||||||||| ||||
seq2  CCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGG  150

seq1  GAGTGGGGGT  160
      ||||||||||
seq2  GAGTGGGGGT  160

seq1: chr18_70022151_70023351
seq2: B6Ng01-008P18.g_68_1272

seq1  GAATTCTTTTAGGTACAAAAGCCTGCTACTTTCCACTGGATGGACTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGGTACAAAAGCCTGCTACTTTCCACTGGATGGACTCAGT  50

seq1  GGGCTCACACTGTGGCTATGAGATTATGGGATGGCTGGATGCTGACTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCACACTGTGGCTATGAGATTATGGGATGGCTGGATGCTGACTAAT  100

seq1  TTTGTCACCTTTAGGAATTTAACCTCATGAGCTTCAGCCTCTTGAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACCTTTAGGAATTTAACCTCATGAGCTTCAGCCTCTTGAACTGT  150

seq1  ATGTAATGATAAGACCCAGCTCATGAGAGTCTTAGGAGAGTTAAGTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGATAAGACCCAGCTCATGAGAGTCTTAGGAGAGTTAAGTAAAG  200

seq1  CGGTTAAACCTTGTTGGAGGCTGGAGAAATGAATCAACAGTTAAGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTAAACCTTGTTGGAGGCTGGAGAAATGAATCAACAGTTAAGAGCAC  250

seq1  TTGCTGGTCCTTCCGAGTTCCTAGGAATCAGTTCTTAGCACACACACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTCCTTCCGAGTTCCTAGGAATCAGTTCTTAGCACACACACACT  300

seq1  ACAGCTCTGCCTCTCTGTGTTCTTAGCACACACACACTACAGCTCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTGCCTCTCTGTGTTCTTAGCACACACACACTACAGCTCTGCCT  350

seq1  CTCTGTAACTGTAACTTCAGGGGATCGGACACCGTCTTCTGGCCTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAACTGTAACTTCAGGGGATCGGACACCGTCTTCTGGCCTCTTTG  400

seq1  GGTTTCTGCAATGCATATATTATATATAAATCCATGAAACACATACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGCAATGCATATATTATATATAAATCCATGAAACACATACACAT  450

seq1  ACAAACAATAAACAAGTCGTCTTCTCTTTCTTCTTTACTTTTAAAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAATAAACAAGTCGTCTTCTCTTTCTTCTTTACTTTTAAAATTGA  500

seq1  CCTTTATAGATTCAGCTAGAAACAGAGCCTAATCTTATTGTTTCAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATAGATTCAGCTAGAAACAGAGCCTAATCTTATTGTTTCAACAAA  550

seq1  ATGATCTAATATAGGGAATTGTCTTCATCTCTCTGTCCTCAGAGGCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTAATATAGGGAATTGTCTTCATCTCTCTGTCCTCAGAGGCCTAA  600

seq1  ATATTAGTTCAATAAATTTTGTGGGTAGAATGGGTATAATATTTTACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTTCAATAAATTTTGTGGGTAGAATGGGTATAATATTTTACTAT  650

seq1  TATATAGTTTCAAAATGGAAGGGACCAAATTTGAATCTCGGTAATGCGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTTTCAAAATGGAAGGGACCAAATTTGAATCTCGGTAATGCGTC  700

seq1  TTCAGACTCACCATTAACAGTCATGGCTCAACTTCCAATCAAGGAGACTT  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTCGCCATTAACAGTCATGGCTCAACTTCCAATCAAGGAGACTT  750

seq1  TAGAAAAGTCACAAACAGATTTCCAGAAACACCCAAGAATTGTTTCGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGTCACAAACAGATTTCCAGAAACACCCAAGAATTGTTTCGGCT  800

seq1  GGTGCTACAGAGGCTTAACCAGTGTGCAACCTTTGATACTTCCTGGTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTACAGAGGCTTAACCAGTGTGCAACCTTTGATACTTCCTGGTATC  850

seq1  TATTTTGTACATGCCTTGACAGATTCCAAACCCAGGACTTTGCCGCTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTACATGCCTTGACAGATTCCAAACCCAGGACTTTGCCGCTGAC  900

seq1  ATAATACAAACCCTTAGACTTTGGAACTGTGTCATGATGCCTGACTTCCC  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATAATACAAACCCTTAGACTTTGGAACTGTGTCATGATGCCTGACTTCTC  950

seq1  AGTCACAGGGATGCAGTAACCACAACAACTGAGCTCTTAAGTTCATGGTA  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTCACAGGGATGCAGTAA-CACAACAACTGAGCTCTTAAGTTCATGGTA  999

seq1  CCTACCCTG-CTCCAAGAGACAATGCTACCCTG-TCTCAGGCTCCCAG-A  1047
      ||||||||| || ||  ||||||||||||| || | |||| ||||||| |
seq2  CCTACCCTGCCTTCAGAAGACAATGCTACCTTGTTTTCAGCCTCCCAGAA  1049

seq1  AACATCCTCTGAACAGTGAAAATACGCTTTCATTCTAGT-GAT--GGAGT  1094
      |||||| ||||||| ||||||| |||| ||||||||||| |||  |||||
seq2  AACATCTTCTGAACGGTGAAAAAACGCCTTCATTCTAGTGGATTGGGAGT  1099

seq1  CAAAATGTTCTAGAATTGTTC-TACATGCACTGGCAAC-TGAGGTGTGCT  1142
      |||||| |||||  ||  ||| ||||||||||||| || ||||| |||||
seq2  CAAAATTTTCTAAGATGTTTCTTACATGCACTGGCCACTTGAGG-GTGCT  1148

seq1  ACTGTAAATTCTTAC-ATA-TCCATACTGCTGGAGGAGAGCAGACATGGC  1190
      | | |||  |||||| ||| ||||| |||||||| ||||||  |||||||
seq2  ATTTTAA--TCTTACAATATTCCAT-CTGCTGGA-GAGAGC--ACATGGC  1192

seq1  CAT-TCTA-AATA  1201
      ||| |||| ||||
seq2  CATCTCTATAATA  1205