BAC Information

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BAC

Clone NameB6Ng01-009H22
ChromosomeY (Build37)
Map Location 1,870,346 - 1,870,573
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H22.bB6Ng01-009H22.g
ACCDH845419DH845420
length1,268472
definitionDH845419|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H22, 5' end.DH845420|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgttctggctactagtttcctgtgttagattgtgaatatttata
atcacatgtatactgtaaaatagtaaaatttattggcatacatcacactg
actcttccaagatatattgttacactgaagtaatacaaactgttaaagca
ctataaaatagttaaatattttgagtgtgtttattactaaaggattagaa
atggacttaaaatgtttgttccactgtttaccattctagttggtggcatg
aacctaggaaggtagggaataaaataatgcagacaaaagtcacacacaat
agcaaatatctctccgagtactgcacatttttatactcttaagtttatta
aggatcatattttaaagtcttcaatcacaaggacaagcgacaagagccaa
agtatgtttttacttagagtcatatgaattacaaatgctgatcactccta
aatactacatctggagtaaggatgaaagcacacttcaaaaacaattgttt
ctgaatcctctcttggattttcctcacactctgaatttctccctcatgat
tccattcttgaccattgttttgagatctccatattttatttctatcatca
tcatcaacatcatattcatttgttaattttacatatcactcactgcatac
ctcctggacccccctcccacaatcccttcctttatcactctcctcttttc
atctgagcatctgagaaacctctgtgtatcaccctactcttgcacattaa
gtatctgctaagctagcattctccctttccactggggcaagacaaggcag
cccaactagaagaacatgttccatatacaggcaacagcttttaggatagt
tctctcactctggttgtccaggactcacatgaaaatcaagctgcatatct
gctacatatgtgcaggaaaggcctggcttcatcctcttatgtggtctttg
cttggtgatttaggtctctgagagtcttcaagaagtcaggctaggttgac
ttgtttttccatggagttcaatgctcaaatttcttcttccaatgctttca
tagaggcccaacttcatccactatttggctgtcgatatgtgcatctatct
gagtcaaattctgggttggactcctcgaggacattctgttagatttctgg
ttggcaaacttaacggatcactggatagtgtcatgcattggaacttgcat
gggatggccaagtgaacaatactggttagctatttcgcatgcttctgtga
tctcgtccatcgcatgct
tgtttacacccatggaaggagttacagagacggagtttggagctgagatg
aaaggatggaccatgtagagactgccatagccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttattgaa
aggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcatagggctccc
aatggaggagctagagaaagtagccaaggagctaaagggatctgcaaccc
tataggtggaacaacattatgagctaaccagtaccccggagctcttgact
ctagctgcatatatatcaaaagatggcctagtcggccatcactggaaaga
gaggcccataggacttgcaaactttatatgccccagtacaggggaattcc
agggtcaaaaagggggagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870573
seq2: B6Ng01-009H22.g_336_547

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||| ||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      |  |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATA  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| |||||||||||||||||||||||||||||||  |||||| |||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATTCCAGGGTCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGG  228
      ||||| ||||||                
seq2  AGGGGGAGTGGG----------------  212