BAC Information

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BAC

Clone NameB6Ng01-010E13
Chromosome1 (Build37)Y (Build37)
Map Location 107,819,288 - 107,820,3401,870,346 - 1,870,842
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
Downstream geneEG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010E13.bB6Ng01-010E13.g
ACCDH845995DH845996
length1,026375
definitionDH845995|Mus musculus domesticus DNA, BAC clone: B6Ng01-010E13, 5' end.DH845996|Mus musculus domesticus DNA, BAC clone: B6Ng01-010E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,819,288 - 107,820,340)(1,870,346 - 1,870,842)
sequence
gaattcttggacttccttgtggagttgaaactgagtgaattacctgctgg
ttaccattgctcaatttctaactcattagtcatacttaacagctcctctt
tcatttccaccaaggacctcagagtggtttgcaaaggaaattgtaacttc
acaatgagctacaggaagatttactatatttacaaccaagtagggcaaaa
aaaaaaaaaaacagaaacagacacatggcctaggtgtctacccaggttgg
ttggatacctgatatattgctggtcctcaccagctaggcctgaacaacca
aactacagttgcttgaaggaatttctggccaggtattactcccccgagac
tatgccacaaacactggtaaagtcacctgctgttttcactgctcaggttt
gaggcagagcatatgccactgttgctaggccaccacatctcctgtctgtc
agcacaaggccaaggtgacattgtaacgtgtggctactggctgccgaggt
gaggtgaatgtcatttaaaccctggagatggttcctgctgttgggctgtg
tgagtcatcatgtttcccaaggacaatggacatctgctcccagcaaggct
aagaaaccaaactaatccaacagcaagaggatttcttgaaactatcaaaa
caaaaatggcaccctggctgttgcctctgaaggatttaagtcacacttct
gggaacatctcagaggaggggtcagatggacagtaggaatgaaaggatga
agacgcatgcagtggtgctgtcttctgctgtcatggacattgcagtcatg
agcacaaagctgtgactgctttcacaagaccagaaaatcaaagagagggc
tcgaaggaaagaaggaggctggtggagtggagatatgagagagatagaat
atatactaagtgtgcataggtaataaaatcacatgatgatacaatacaat
actgccatacatttatatttgttttaataaagttctccctacgtctcctg
atcacgtatccctcactgctccatgt
ttatagaatcatcattaagaattaagaaattcgtttgctgcaaggaccct
gatatagctgtctcttgtgagactaggccggggcctagcaaacacagaag
tggatgctcacagtcagctattggatggatcacagggcccccaatggagg
agctatagaaagtatccaaggagctaaagagatctgcaaccctgtaggtg
caacattatgaactaaccagtaccccggagctcttgactctagctgcata
tgtatcaaaagatggcctagtcggccatcactgaaaagagaggcccattg
gacatgcaaactttatatgccccagtacaggggaacgccagggccaaaaa
atgggaatgggtgggtagggaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107819288_107820340
seq2: B6Ng01-010E13.b_47_1072

seq1  GAATTCTTGGACTTCCTTGTGGAGTTGAAACTGAGTGAATTACCTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGACTTCCTTGTGGAGTTGAAACTGAGTGAATTACCTGCTGG  50

seq1  TTACCATTGCTCAATTTCTAACTCATTAGTCATACTTAACAGCTCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTGCTCAATTTCTAACTCATTAGTCATACTTAACAGCTCCTCTT  100

seq1  TCATTTCCACCAAGGACCTCAGAGTGGTTTGCAAAGGAAATTGTAACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCACCAAGGACCTCAGAGTGGTTTGCAAAGGAAATTGTAACTTC  150

seq1  ACAATGAGCTACAGGAAGATTTACTATATTTACAACCAAGTAGGGCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGCTACAGGAAGATTTACTATATTTACAACCAAGTAGGGCAAAA  200

seq1  AAAAAAAAAAACAGAAACAGACACATGGCCTAGGTGTCTACCCAGGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACAGAAACAGACACATGGCCTAGGTGTCTACCCAGGTTGG  250

seq1  TTGGATACCTGATATATTGCTGGTCCTCACCAGCTAGGCCTGAACAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACCTGATATATTGCTGGTCCTCACCAGCTAGGCCTGAACAACCA  300

seq1  AACTACAGTTGCTTGAAGGAATTTCTGGCCAGGTATTACTCCCCCGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAGTTGCTTGAAGGAATTTCTGGCCAGGTATTACTCCCCCGAGAC  350

seq1  TATGCCACAAACACTGGTAAAGTCACCTGCTGTTTTCACTGCTCAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACAAACACTGGTAAAGTCACCTGCTGTTTTCACTGCTCAGGTTT  400

seq1  GAGGCAGAGCATATGCCACTGTTGCTAGGCCACCACATCTCCTGTCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGCATATGCCACTGTTGCTAGGCCACCACATCTCCTGTCTGTC  450

seq1  AGCACAAGGCCAAGGTGACATTGTAACGTGTGGCTACTGGCTGCCGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGGCCAAGGTGACATTGTAACGTGTGGCTACTGGCTGCCGAGGT  500

seq1  GAGGTGAATGTCATTTAAACCCTGGAGATGGTTCCTGCTGTTGGGCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAATGTCATTTAAACCCTGGAGATGGTTCCTGCTGTTGGGCTGTG  550

seq1  TGAGTCATCATGTTTCCCAAGGACAATGGACATCTGCTCCCAGCAAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATCATGTTTCCCAAGGACAATGGACATCTGCTCCCAGCAAGGCT  600

seq1  AAGAAACCAAACTAATCCAACAGCAAGAGGATTTCTTGAAACTATCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCAAACTAATCCAACAGCAAGAGGATTTCTTGAAACTATCAAAA  650

seq1  CAAAAATGGCACCCTGGCTGTTGCCTCTGAAGGATTTAAGTCACACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGGCACCCTGGCTGTTGCCTCTGAAGGATTTAAGTCACACTTCT  700

seq1  GGGAACATCTCAGAGGAGGGGTCAGATGGACAGTAGGAATGAAAGGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACATCTCAGAGGAGGGGTCAGATGGACAGTAGGAATGAAAGGATGA  750

seq1  AGACGCATGCAGTGGTGCTGTCTTCTGCTGTCATGGACATTGCAGTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCATGCAGTGGTGCTGTCTTCTGCTGTCATGGACATTGCAGTCATG  800

seq1  AGCACAAAGCTGTGACTGCTTTCACAAGACCAGAAAATCAAAGAGAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAAGCTGTGACTGCTTTCACAAGACCAGAAAATCAAAGAGAGGGC  850

seq1  TCGAAGGAAAGAAGGAGGCTGGTGGAAGTGGAAGATAATGAGAGAGAATA  900
      ||||||||||||||||||||||||| ||||| |||| ||||||||| |||
seq2  TCGAAGGAAAGAAGGAGGCTGGTGG-AGTGG-AGAT-ATGAGAGAG-ATA  896

seq1  GAATATATACTAAGTGTGCCATAGGTAAATATAATCACAATGAATGGAAT  950
      |||||||||||||||||| ||||||| |||| |||||| ||| |||  ||
seq2  GAATATATACTAAGTGTG-CATAGGT-AATAAAATCAC-ATG-ATG--AT  940

seq1  ACAAATACAATACTGCCAATACATTTAAATATATGTTTATAAATAAAAAG  1000
      || |||||||||||||| ||||||||  |||| |||||     ||| || 
seq2  AC-AATACAATACTGCC-ATACATTT--ATATTTGTTT-----TAATAAA  981

seq1  GTCTCTCCCCTACGTCTCCCTGATCAACGTATTCCCCTCACTGCTTCCCA  1050
      || ||| |||||||||| ||||||| ||||||  |||||||||||  |||
seq2  GT-TCT-CCCTACGTCT-CCTGATC-ACGTAT--CCCTCACTGCT--CCA  1023

seq1  TGT  1053
      |||
seq2  TGT  1026

seq1: chrY_1870346_1870842
seq2: B6Ng01-010E13.g_224_446

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||| |||||||| |||||||||||||| ||||||||||||| ||||||  
seq2  CTATAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTG--  48

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
       ||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  -CAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  97

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGAAAAGAGAGGCCCATT  147

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  197

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGCTATGGGGGACTT  250
      |  || | ||||||||||||| |||                         
seq2  AATGGGAATGGGTGGGTAGGGAAGTC------------------------  223

seq1  TTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTTAAAAAAATGGA  300
                                                        
seq2  --------------------------------------------------  223

seq1  AAAGAGAAAAAAAACTAATATAAAAAGATTATTTTGGCCAAAATAGCTCT  350
                                                        
seq2  --------------------------------------------------  223

seq1  AATAAAATTACACATTTCAAAGGCACATGCAATAATTTGTAGGTGTGTAT  400
                                                        
seq2  --------------------------------------------------  223

seq1  GTGCTAATAGATCTACATAGAAAAGTGTAATATGCATCCTCATTAAAAAT  450
                                                        
seq2  --------------------------------------------------  223

seq1  TACTGTTATATGATACCTGACAAAAATTTAAAGGAAGATTTGAAGTC  497
                                                     
seq2  -----------------------------------------------  223