BAC Information

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BAC

Clone NameB6Ng01-011M14
Chromosome8 (Build37)Y (Build37)
Map Location 96,793,590 - 96,794,6781,870,346 - 1,870,530
singlet/doubletsingletsinglet
Overlap geneNup93
Upstream geneAU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, LOC100041555
Downstream geneSlc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011M14.bB6Ng01-011M14.g
ACCDH847072DH847073
length1,081494
definitionDH847072|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M14, 5' end.DH847073|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,793,590 - 96,794,678)(1,870,346 - 1,870,530)
sequence
gaattcttttgacttgtagcaggtttagaaagtcagccacctcctgtagg
ttgtttgggatagtgttcatcctggtcactaagcactgtctctgtctaac
acatgttggatgcttaggaaagagcagttttcttcacagaactttacatt
gatatagcagagtcagttttacaaaccctgacctgagtcctagagagatt
ctgtaaatctaatagaactcacacagaagcctggccctcagggttttgtt
ttggttttggtttttttccccagtctcagagaccctgcattgaatgcact
aattgttcaaatatgtgctagaaaggaaaaggtggctttccctttgattt
ccacaaggcttacacctcaaaatgaaagtgtcttcaggcagtgaatcaga
actgcaaccttacctagaaggatggcttaaggagctctaccgagccttcc
tttaaaaaatcttttaagtgctgtttgttagaagattctgtgggttctcc
cctcctccgttactgactttatagaaaagctctgtgccaagtacctttca
gatcagctgggaggtgcagaggtctagtgctttgtgttttactcacttcc
agcctggctactccagtttggctgctagaggaggctcttcctgatactgt
attcttgagtttctgcagtttggaagcttttccaaagcttttcacataaa
attttaaccctttgagagtaaagattcaggggtcagttctttccgtgaca
gaaaaatatattcctatcacacctttgactgcgctggcagtacagagtag
acaagcagacatgccagccagcttgctaggaagcatgctgtggcactaaa
tggcagcgaggaaggagtaaaatggcgtcaccgggggcaccatgaggaga
tccggactgcagttattttctagaaagtctgaagacatccttaggaacac
caccaacaaccatttcatgcttacctggtatcagtaggagatagagtttt
cagatttccttaaagcgtgtagcactcaatctagacttcaacaccacctt
gaaagatgaattaccaccttggagttgcctc
agtaccctcttcttcgtttttccttttgtttagtttgctttctttctttc
tttttcctttatttatttatttagttagtttttttgtttcgtttgaggtg
gattctcattaagaagcccaggctcatatccagggatccaccccataatc
agcatccaaacactgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
ataggtggaacaacattatgaactaaccagtaccccggagctcttgactc
tagctgcatatgtatcaaaagatggcctagtcggccatcactggaaagag
aggcccattggacttgcaaactttatatgccccagtacagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96793590_96794678
seq2: B6Ng01-011M14.b_46_1126

seq1  GAATTCTTTTGACTTGTAGCAGGTTTAGAAAGTCAGCCACCTCCTGTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGACTTGTAGCAGGTTTAGAAAGTCAGCCACCTCCTGTAGG  50

seq1  TTGTTTGGGATAGTGTTCATCCTGGTCACTAAGCACTGTCTCTGTCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGGATAGTGTTCATCCTGGTCACTAAGCACTGTCTCTGTCTAAC  100

seq1  ACATGTTGGATGCTTAGGAAAGAGCAGTTTTCTTCACAGAACTTTACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGGATGCTTAGGAAAGAGCAGTTTTCTTCACAGAACTTTACATT  150

seq1  GATATAGCAGAGTCAGTTTTACAAACCCTGACCTGAGTCCTAGAGAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGCAGAGTCAGTTTTACAAACCCTGACCTGAGTCCTAGAGAGATT  200

seq1  CTGTAAATCTAATAGAACTCACACAGAAGCCTGGCCCTCAGGGTTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATCTAATAGAACTCACACAGAAGCCTGGCCCTCAGGGTTTTGTT  250

seq1  TTGGTTTTGGTTTTTTTCCCCAGTCTCAGAGACCCTGCATTGAATGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGGTTTTTTTCCCCAGTCTCAGAGACCCTGCATTGAATGCACT  300

seq1  AATTGTTCAAATATGTGCTAGAAAGGAAAAGGTGGCTTTCCCTTTGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCAAATATGTGCTAGAAAGGAAAAGGTGGCTTTCCCTTTGATTT  350

seq1  CCACAAGGCTTACACCTCAAAATGAAAGTGTCTTCAGGCAGTGAATCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGCTTACACCTCAAAATGAAAGTGTCTTCAGGCAGTGAATCAGA  400

seq1  ACTGCAACCTTACCTAGAAGGATGGCTTAAGGAGCTCTACCGAGCCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAACCTTACCTAGAAGGATGGCTTAAGGAGCTCTACCGAGCCTTCC  450

seq1  TTTAAAAAATCTTTTAAGTGCTGTTTGTTAGAAGATTCTGTGGGTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATCTTTTAAGTGCTGTTTGTTAGAAGATTCTGTGGGTTCTCC  500

seq1  CCTCCTCCGTTACTGACTTTATAGAAAAGCTCTGTGCCAAGTACCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCGTTACTGACTTTATAGAAAAGCTCTGTGCCAAGTACCTTTCA  550

seq1  GATCAGCTGGGAGGTGCAGAGGTCTAGTGCTTTGTGTTTTACTCACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTGGGAGGTGCAGAGGTCTAGTGCTTTGTGTTTTACTCACTTCC  600

seq1  AGCCTGGCTACTCCAGTTTGGCTGCTAGAGGAGGCTCTTCCTGATACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCTACTCCAGTTTGGCTGCTAGAGGAGGCTCTTCCTGATACTGT  650

seq1  ATTCTTGAGTTTCTGCAGTTTGGAAGCTTTTCCAAAGCTTTTCACATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAGTTTCTGCAGTTTGGAAGCTTTTCCAAAGCTTTTCACATAAA  700

seq1  ATTTTAACCCTTTGAGAGTAAAGATTCAGGGGTCAGTTCTTTCCGTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACCCTTTGAGAGTAAAGATTCAGGGGTCAGTTCTTTCCGTGACA  750

seq1  G-AAAATATATTCCTATCACACCTTTGACTGCGCTGGCAGTACAGAGTAG  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATATTCCTATCACACCTTTGACTGCGCTGGCAGTACAGAGTAG  800

seq1  ACAAGCAGACATGCCAGCCAGCTTGCTAGGAAGCATGCTGTGGCACTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACAAGCAGACATGCCAGCCAGCTTGCTAGGAAGCATGCTGTGGCACTAA-  849

seq1  ATGGCAGCGAGGAAGGAGTAAAATGGCGTCACCGGGGGCACCATGAGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCGAGGAAGGAGTAAAATGGCGTCACCGGGGGCACCATGAGGAG  899

seq1  ATCCGGACTGCAGTTATTTTCTAGAACAGTCTGAAGACATCCTTAGGAAC  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCCGGACTGCAGTTATTTTCTAGAA-AGTCTGAAGACATCCTTAGGAAC  948

seq1  ACCACCAACAAACATTTCATGCTTACTTGTTATCAGTAGGAGATAGAAGT  999
      ||||||||||| |||||||||||||| || |||||||||||||||| |||
seq2  ACCACCAACAACCATTTCATGCTTACCTGGTATCAGTAGGAGATAG-AGT  997

seq1  TTTCAGATTTTCCTAAAGCGTTGTTAGCACTCATATCTAGACTTCAAACA  1049
      |||||||||| | ||||||||   ||||||||| ||||||||||| ||||
seq2  TTTCAGATTTCCTTAAAGCGT--GTAGCACTCA-ATCTAGACTTC-AACA  1043

seq1  CCACCTTTGAGAGATTGTATTAACACTTTGGAGTTGCCTC  1089
      ||||| |||| ||| || |||| ||| |||||||||||||
seq2  CCACC-TTGAAAGA-TGAATTACCACCTTGGAGTTGCCTC  1081

seq1: chrY_1870346_1870530
seq2: B6Ng01-011M14.g_384_568

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGA  185
      |||| ||||||||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGA  185