BAC Information

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BAC

Clone NameB6Ng01-012D22
Chromosome3 (Build37)Y (Build37)
Map Location 74,663,436 - 74,664,5011,967,407 - 1,967,715
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667425, LOC619764, LOC667434, LOC100041551, EG667459
Downstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012D22.bB6Ng01-012D22.g
ACCDH847390DH847391
length1,063921
definitionDH847390|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D22, 5' end.DH847391|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,663,436 - 74,664,501)(1,967,407 - 1,967,715)
sequence
gaattcttggatgttttgggtttggagcttcagaaatgtcactctaaaca
tggataaaggtctttctttcttttttttttcttattgttatttacatttg
ctttaccccaactgtaaaatatacataaaattttaaatggtttgtgatta
catggagtcacatctgtagaaataaccaaaatttctattaaattaaaatg
tgtatttaattgtgtttattgagtctgagttcatgaagattatttctgca
gcatgctaaggacattatttgttaattcattttgatacttttttaatctt
aatacctttactatctcaaatagaaagcattttcataggatctcaactct
taaaaaaatttacccatgtagatgcttaaatttagtcaaatttatagtga
gcaatattaaatttactcacaataattaaatttatccaaaatgattgact
atgtctgatgctaaattacagatacatctacttcttatggatattacagt
ggaactagtgcatttggctgatggcaatcagttttctatatgactttcta
aattatcattccataaattccataagtaattattattttgccatggaagt
agtgttactatcataaaactcatcagatgttataactctggataatacca
gtttattctggcctcatagtgttgtggattgctatttgtattttctcctc
ccttctgccccaacaaggaatagaccacatactcaggtgctgtcagttga
tttcagataatgctagaacctgtgactggggaatggaaggaaaaggctaa
gctgaatgttttagaaaagggagaggaggagaagaaaagagagacagagg
atggagagagaagaagatggaggaagaagagtttggagattgtatgaaga
ggacccgcaattacctagggatttcataggagattataattatattattg
agttgtattctttgcatggcattttggggtggagctagcattggggtggc
cataaccactgataccaccacagagcagtgtttagctggtttaaatatta
tcataatataata
gaattctttgtttagctctgagccccatttttttaatccagttttttttg
agcatttacatagctttttattgtagaaagttcttactatattaggaccc
caataataaattcaataaacaaatatgaagtgttacattcatttgtggat
taaaaaaaaaaaaaaacaacaaccaaccaaccaaacaaacagacaaacaa
aacagagaacagtacatagatacaggctttgaactcaaactctcatgctt
actatttgataaactcggtcatatcatttaactcttctcttttttaattc
tttttttattcagtattttcctcaattacatttccaaatctaccccaaaa
gtcccccataccctcaagccctactcccctatccacccactcccactttt
tggccctggcgttcccctgtactggggcatataaagtttgcctgaccaat
gggcctctctttccagtgatggccaactaggccatcttttgattcatatg
cagctagagacaagagctccggggtactggttagttcatattattgttcc
acctatagggttgcaggtccctttaggtcattgggtactttctctagctt
ctccattgggggccctgtgatgcatcctatagctgactgtgagcatccat
ttatgtgtttgctaggccccggcatagtctcacaagaaacagctatatca
ggatcctttcagcaaacccttgctaatgaatgcaatggtgtcatcatttg
gaggctgattatgggaatgtatccctggatatggcagtttctagatggcc
catccttttgtctcaggttgaactttttctctgtaactccttccatgggt
attttgttcccaatttaaaagaaggggcaaagtgtccacactttggtctt
tgttcttcttcagtttcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_74663436_74664501
seq2: B6Ng01-012D22.b_45_1107 (reverse)

seq1  TAT--TATTATTATTATTTAAAAACCAAGCTAAACACTGCTCTTGTGGTG  48
      |||  |||||| || || |  ||||| ||||||||||||||| |||||||
seq2  TATTATATTATGATAATATTTAAACC-AGCTAAACACTGCTC-TGTGGTG  48

seq1  GTATCAGTGGTTATGGCCACCCCATTGCTAGCTCCAACCCCAAAATGCCC  98
      |||||||||||||||||||||||| |||||||||| ||||||||||| ||
seq2  GTATCAGTGGTTATGGCCACCCCAATGCTAGCTCC-ACCCCAAAATG-CC  96

seq1  ATGCAAAGAATACAACTCAATAATATAATTATAATCTTCCTATGAAATCC  148
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGCAAAGAATACAACTCAATAATATAATTATAATC-TCCTATGAAATCC  145

seq1  CTAGGTAATTGCGGGTCCTCTTCATACAATCTCCAAACTCTTCTTCCTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAATTGCGGGTCCTCTTCATACAATCTCCAAACTCTTCTTCCTCC  195

seq1  ATCTTCTTCTCTCTCCATCCTCTGTCTCTCTTTTCTTCTCCTCCTCTCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTCTCTCTCCATCCTCTGTCTCTCTTTTCTTCTCCTCCTCTCCC  245

seq1  TTTTCTAAAACATTCAGCTTAGCCTTTTCCTTCCATTCCCCAGTCACAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAAACATTCAGCTTAGCCTTTTCCTTCCATTCCCCAGTCACAGG  295

seq1  TTCTAGCATTATCTGAAATCAACTGACAGCACCTGAGTATGTGGTCTATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCATTATCTGAAATCAACTGACAGCACCTGAGTATGTGGTCTATT  345

seq1  CCTTGTTGGGGCAGAAGGGAGGAGAAAATACAAATAGCAATCCACAACAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGGGGCAGAAGGGAGGAGAAAATACAAATAGCAATCCACAACAC  395

seq1  TATGAGGCCAGAATAAACTGGTATTATCCAGAGTTATAACATCTGATGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGCCAGAATAAACTGGTATTATCCAGAGTTATAACATCTGATGAG  445

seq1  TTTTATGATAGTAACACTACTTCCATGGCAAAATAATAATTACTTATGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGATAGTAACACTACTTCCATGGCAAAATAATAATTACTTATGGA  495

seq1  ATTTATGGAATGATAATTTAGAAAGTCATATAGAAAACTGATTGCCATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGAATGATAATTTAGAAAGTCATATAGAAAACTGATTGCCATCA  545

seq1  GCCAAATGCACTAGTTCCACTGTAATATCCATAAGAAGTAGATGTATCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGCACTAGTTCCACTGTAATATCCATAAGAAGTAGATGTATCTG  595

seq1  TAATTTAGCATCAGACATAGTCAATCATTTTGGATAAATTTAATTATTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAGCATCAGACATAGTCAATCATTTTGGATAAATTTAATTATTGT  645

seq1  GAGTAAATTTAATATTGCTCACTATAAATTTGACTAAATTTAAGCATCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATTTAATATTGCTCACTATAAATTTGACTAAATTTAAGCATCTA  695

seq1  CATGGGTAAATTTTTTTAAGAGTTGAGATCCTATGAAAATGCTTTCTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTAAATTTTTTTAAGAGTTGAGATCCTATGAAAATGCTTTCTATT  745

seq1  TGAGATAGTAAAGGTATTAAGATTAAAAAAGTATCAAAATGAATTAACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTAAAGGTATTAAGATTAAAAAAGTATCAAAATGAATTAACAA  795

seq1  ATAATGTCCTTAGCATGCTGCAGAAATAATCTTCATGAACTCAGACTCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCCTTAGCATGCTGCAGAAATAATCTTCATGAACTCAGACTCAA  845

seq1  TAAACACAATTAAATACACATTTTAATTTAATAGAAATTTTGGTTATTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAATTAAATACACATTTTAATTTAATAGAAATTTTGGTTATTTC  895

seq1  TACAGATGTGACTCCATGTAATCACAAACCATTTAAAATTTTATGTATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGTGACTCCATGTAATCACAAACCATTTAAAATTTTATGTATAT  945

seq1  TTTACAGTTGGGGTAAAGCAAATGTAAATAACAATAAGAAAAAAAAAAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTTGGGGTAAAGCAAATGTAAATAACAATAAGAAAAAAAAAAGA  995

seq1  AAGAAAGACCTTTATCCATGTTTAGAGTGACATTTCTGAAGCTCCAAACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGACCTTTATCCATGTTTAGAGTGACATTTCTGAAGCTCCAAACC  1045

seq1  CAAAACATCCAAGAATTC  1066
      ||||||||||||||||||
seq2  CAAAACATCCAAGAATTC  1063

seq1: chrY_1967407_1967715
seq2: B6Ng01-012D22.g_349_663

seq1  TTCTCTTT-----TCCATTTTTTA--AGGTATTTAGCTCATTTACATTTC  43
      ||||||||     | | |||||||    ||||||  |||| |||||||||
seq2  TTCTCTTTTTTAATTCTTTTTTTATTCAGTATTTTCCTCAATTACATTTC  50

seq1  CAATGCTATACCAAAAGTCCCCCATAGCCACCCACCCCCACTCCCCTACC  93
      |||  |||  |||||||||||||||| ||  | | ||| ||||||||| |
seq2  CAAATCTACCCCAAAAGTCCCCCATA-CCCTCAAGCCCTACTCCCCTATC  99

seq1  CACCCACTGCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATA  143
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATA  149

seq1  AAGTTTGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCC  193
      |||||||| || ||||||||||||||||||||||||||||| ||||||||
seq2  AAGTTTGCCTGACCAATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCC  199

seq1  ATCTTTTGATACCTATGCAGCAAGAGTCAAGAGCTCAGGGGTAATGGTTA  243
      |||||||||| | |||||||| |||| ||||||||| |||||| ||||||
seq2  ATCTTTTGATTCATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTA  249

seq1  GTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG  293
      ||||||| | ||||||||||||||||||||||| ||||||||| || |||
seq2  GTTCATATTATTGTTCCACCTATAGGGTTGCAGGTCCCTTTAGGTCATTG  299

seq1  GGTACTTTCTCTAGCT  309
      ||||||||||||||||
seq2  GGTACTTTCTCTAGCT  315