BAC Information

Click to search

BAC

Clone NameB6Ng01-014B17
ChromosomeY (Build37)X (Build37)
Map Location 248,287 - 248,45671,259,764 - 71,260,793
singlet/doubletsingletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014B17.bB6Ng01-014B17.g
ACCDH848744DH848745
length9881,039
definitionDH848744|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B17, 5' end.DH848745|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(248,287 - 248,456)(71,259,764 - 71,260,793)
sequence
gaattctttgtttagctctgtaccccatttttaatagggttatttgtttc
tttggagtctaacttcttgagttatttgtatatattagatattggatatt
agccctctatcagatgtaggattggtaaagatcttttcccagtctgttgg
ttgccattttgtcctgttgacagtgtcctttgccttacagaagctttgca
attttatgagacatttgtcaattctttttttgtttgtttggttggttttt
tgtttgtttgtttgtttcgagacagggtttctctgtgtagccctggctgt
cctggaactaactctgtagaccaggctggcctcgaactcagaaatttgcc
tgcctctgcctcccaagtgctgagattaaaggcgtgtgccaccatgcccg
gctcccatttgtcaactcttgatcttagagaataagctattggtgttctg
ttcaggaaaatttctcctgtgcccatgtgctcaaagctcctccctacttt
cttttctattagtttcagtgtatctggttttatgtggaggtccttgatcc
acttggacttgagctttgtacaaggagataagaatgaaccaattttgtat
tcttctacatgctaaccaccagttgaaccagaaccacttgttgaaaatac
tgtcttttttccactcgatggttttagctcctttgtcaaagatcaagtga
ccatagctgtgcgaattcatttctgggtcttcaattctattccattgacc
tacctgcctgtcattgtaccaataccatgcagttttatctctattgctct
gtagtacagcttgaggtcagggatggtgattccctcagtagttcttttat
tgttgagaatagtttttgctgtcctgggtttttgtattccaagatgaatt
tgagaattgctgattctactttttgaagaattgagttgggatttgatgga
gatacattgaatctgtagatgctttaagcaggatagcc
gaattccagagctgatttgttcactctgacaaatccctcagactcagagg
tcaaagttctcatgcttggaagttctcatagtgtgcaaactcctcagtag
cccaaaggcatcaggtgtgggggctcactctggcaaaggagagagggcag
tggaccctgctgttctcagaatgtgaacacagacagggccagccaaagaa
cttgatagaagctgataaggcaggcaatgtgaggccagcatttgtgagca
aggcaagcagagtacctaaggaattgggtagtacaaaacagaagactggg
gctggtgagatggctcagtgggtatgagcacccgattgctcttccaaagg
tccggagttcaaatcccagcaaccacatggtggctcacaaccatctgtaa
caagatctgacgccctcttctggagtgtctgaagacagctacagtgtact
tatatataataaataaatctttaaaaaaaaaaaacagaagactgctagct
acacaggcccagaggacacaagtaggtctgtttgtatggtgggagctagc
tcccctgagagctagataatatatctgcagtctgtgagtctattcctcag
aactttccctaaaacaccaagcgaaagtagctgttggtgcttgtaaattg
caaaaaaaaaaaaaaaaaaaaaagagtgtcttacagttcagtccattagc
tagagttgagcactctgagattcctcccaaggagtctaataaaacccccc
cctcccccatcttgggtggatatatggcaagtcttgccagatagcagtga
actagttcatatgactacctggctgcctaggaggtcttctttataccctt
gcaattgactgtggatgcccaagggttcttgtttatggcaaaagtcccac
caaacccacagttttttggtaccccaacttgtgaaaagccccatgaaaga
tgaaacttgagatgccaagcttatttttgaatggggaagaatgttttcct
tttaaaaaaaacaaatacagtttttgtatattaatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_248287_248456
seq2: B6Ng01-014B17.b_274_444

seq1  TTTGTTTGTTTGTTTG--TTTGTGCTTGTTTGTTTGTTTCGAGATAGGGT  48
      |||||||||||| |||  ||| || ||||||||||||||||||| |||||
seq2  TTTGTTTGTTTGGTTGGTTTTTTGTTTGTTTGTTTGTTTCGAGACAGGGT  50

seq1  TTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTG  98
      ||||||||||| ||||||||||||||||||| ||| ||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTAACTCTGTAGACCAGGCTG  100

seq1  GCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATTA  148
      |||||||||||||||||   ||||||||||| |||||||||||| |||||
seq2  GCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGAGATTA  150

seq1  AAGGAGTGCGCCACCACTGCCC  170
      |||| ||| ||||||| |||||
seq2  AAGGCGTGTGCCACCA-TGCCC  171

seq1: chrX_71259764_71260793
seq2: B6Ng01-014B17.g_69_1107 (reverse)

seq1  ACACTTAATTATACAAAAACTTGTTGTTTTTTTTTTAAATG--TAACATT  48
      |||| | | ||||||||||||   | | ||||||||||| |   ||||||
seq2  ACACATTAATATACAAAAACTGTATTTGTTTTTTTTAAAAGGAAAACATT  50

seq1  CTTCCCCCTCAAATACTTAGCTTTGC-TCTC-AGTTTCTTCTTTCTTGGG  96
      ||||||| |  || | | ||||| || |||| |||||| |||||| ||||
seq2  CTTCCCCATTCAAAAATAAGCTTGGCATCTCAAGTTTCATCTTTCATGGG  100

seq1  GCTTCTCAC-TGTCTGGGTACCACAAAGCTG-GGCTTTGCTGGACCTTTC  144
      |||| ||||  ||  |||||||| ||| ||| || |||| |||  |||| 
seq2  GCTTTTCACAAGTTGGGGTACCAAAAAACTGTGGGTTTGGTGGGACTTT-  149

seq1  TGCCATAAGC-AGAA-CCTTGGGCATCCACAGTCAATTTGCAGGGTATAG  192
      |||||||| | |||| ||||||||||||||||||||||   |||||||| 
seq2  TGCCATAAACAAGAACCCTTGGGCATCCACAGTCAATTGCAAGGGTATAA  199

seq1  AGAGAGCCTGCCTAGGCAGGCAGGTAGTCATATGAAACTAGCTCACTGCT  242
      ||| || |  ||||||||| |||||||||||||| |||||| ||||||||
seq2  AGA-AGACCTCCTAGGCAGCCAGGTAGTCATATG-AACTAGTTCACTGCT  247

seq1  ATCTGGCAAGGCTTG-CATATATCCACCCAAGATGGG---GAGGGGGGTT  288
      |||||||||| |||| |||||||||||||||||||||   | ||||||||
seq2  ATCTGGCAAGACTTGCCATATATCCACCCAAGATGGGGGAGGGGGGGGTT  297

seq1  TTATTAGACT-CTTGGGA-GAATCTCAGAGTGCTCACTTCTAGCTAGTGG  336
      |||||||||| ||||||| |||||||||||||||||  |||||||| |||
seq2  TTATTAGACTCCTTGGGAGGAATCTCAGAGTGCTCAACTCTAGCTAATGG  347

seq1  ACTGAACTGTAAGACACTCTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAT  386
      |||||||||||||||||||    |||||||||||||||||||||||||||
seq2  ACTGAACTGTAAGACACTC----TTTTTTTTTTTTTTTTTTTTTTGCAAT  393

seq1  TTACAAGCA-CAACAGCTACTTTCGCTTGGTGTTTTAGGG-AAGTTCTGA  434
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TTACAAGCACCAACAGCTACTTTCGCTTGGTGTTTTAGGGAAAGTTCTGA  443

seq1  GGAATAGACTCACAGACTGCAGATATATTATCTAGCTCTCAGGGGAGCTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGACTCACAGACTGCAGATATATTATCTAGCTCTCAGGGGAGCTA  493

seq1  GCTCCCACCATACAAACAGACCTACTTGTGTCCTCTGGGCCTGTGTAGCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACCATACAAACAGACCTACTTGTGTCCTCTGGGCCTGTGTAGCT  543

seq1  AGCAGTCTTCTGTTTTTTTTTTTTAAAGATTTATTTATTATATATAAGTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTTCTGTTTTTTTTTTTTAAAGATTTATTTATTATATATAAGTA  593

seq1  CACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTTGTTAC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTTGTTAC  643

seq1  AGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTT  693

seq1  TGGAAGAGCAATCGGGTGCTCATACCCACTGAGCCATCTCACCAGCCCCA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGCAATCGGGTGCTCATACCCACTGAGCCATCTCACCAGCCCCA  743

seq1  GTCTTCTGTTTTGTACTACCCAATTCCTTAGGTACTCTGCTTGCCTTGCT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGTTTTGTACTACCCAATTCCTTAGGTACTCTGCTTGCCTTGCT  793

seq1  CACAAATGCTGGCCTCACATTGCCTGCCTTATCAGCTTCTATCAAGTTCT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGCTGGCCTCACATTGCCTGCCTTATCAGCTTCTATCAAGTTCT  843

seq1  TTGGCTGGCCCTGTCTGTGTTCACATTCTGAGAACAGCAGGGTCCACTGC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGCCCTGTCTGTGTTCACATTCTGAGAACAGCAGGGTCCACTGC  893

seq1  CCTCTCTCCTTTGCCAGAGTGAGCCCCCACACCTGATGCCTTTGGGCTAC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCTTTGCCAGAGTGAGCCCCCACACCTGATGCCTTTGGGCTAC  943

seq1  TGAGGAGTTTGCACACTATGAGAACTTCCAAGCATGAGAACTTTGACCTC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGTTTGCACACTATGAGAACTTCCAAGCATGAGAACTTTGACCTC  993

seq1  TGAGTCTGAGGGATTTGTCAGAGTGAACAAATCAGCTCTGGAATTC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGAGGGATTTGTCAGAGTGAACAAATCAGCTCTGGAATTC  1039