BAC Information

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BAC

Clone NameB6Ng01-014B24
ChromosomeY (Build37)4 (Build37)
Map Location 573,449 - 573,50116,146,125 - 16,147,213
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014B24.bB6Ng01-014B24.g
ACCDH848757DH848758
length9201,065
definitionDH848757|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B24, 5' end.DH848758|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,449 - 573,501)(16,146,125 - 16,147,213)
sequence
gaattctcctgtattgaggcatataaagtttgcaagaccaatgggcctct
ctttccaatgatggccaacttgatgtgaccttagtacaagaaaataggaa
tgaatcaattcacatccttctacatgataatcaccacttgtgccagcacc
attggttgaaaatgctgtcttttttccactggatggttttagctcccttg
tcaaagatcaagtgaccataggtgtgtgggttcatttctgggtcttcaat
tatattccattggtctacttgtctgtcgctactagtaccatgcagttttt
atcacaattgctctatagtaaagctttaggtcaggcatggtgattccacc
agaggttcttttatccttgagaagagtttttgctaacctaggttttttgt
tattccagatgaatttgcagattgccctttctaattcattgaagaattga
gttggaattttgatggggattgcattgaatctgtagattgcttttggcaa
gatagccatttttactatattgatcctgccaatccatgagcatgggagat
ctttccatcttctgagatcttctttaatttctttcttcagagacttgaag
ttcttatcatacagatattcaacttctttagttagagtcacaccaaggta
ttttatattatttgtgactattgagaagggtgttgtttccctactttctt
tctcagcctgattatgctttgtgtagagaaaggacattgacttgagttat
ttttatatatagctacttcactgaaactgtttacaaggtttagagttctc
tggtgaaatttttagggccacttatatatattatcatatcatctgcaaaa
agtgatattttgacttcttcctttccatttgtttccccttaatctccttt
gtgtctaatgctatggctag
gaattccaaatgttcctcaactaagaatgcataagttgtacatctatgca
tagagttctacttagtaataagaaataatgtgctattatgtgagtgaaag
accccattatcaaaatattatataacatgattctatttatttaatatttt
agaaaacacggtggcagaaaatggattgactacaaaagagaaataaaata
ttaattttcattcttagttgtgaactcataaaatggagtacttcaaactg
gtaaattttattgaacgtaaattatattttgatactgtggactgaaaata
cttaggggagaaattaaaacttagataaaaaaataaggaacactcttcag
gattgttaaggactttgtgcagtgtaattttatttcaaattgacacaggt
agagttatcagagtggaaagagcctcgactgagaaaacacctccataagg
tcaggctgaaggcaagtatgtaaggcattttattatcaggggttgatgtg
ggagagcctagcccactgtgggaagggccacccctgggaccttggtcctg
ggttctataagaaagcaggctgagcaagccatgaggagcaaaccaataag
cagcatccctccatggcttctgcatcagctcttgcctccaggttcctagc
ctgcttgagttcctgccctcactgcttttgatgatgaactattatatgaa
attgtgagtgaaattaatcctttcctactcaagttagttttggccatggt
gtttcatcagagcaatagtaaccctaattaagatatagtttttcaataaa
actccagtttgctcagaaaataatcctgggcactgacaaagtggatttca
caaagttaaaagcacacaagcaaaggaacagttaatcaataaggaatcgt
ctaattgcacgtatatctcaaagtgtgtgtgtgtgtgtactgctagtttg
tatcaacttgacacagctggagtatccagagaagagctcagtggaggaat
tgcttcatgaatcactgtaagcattttccataatgatcaagggaaaggcc
ccttgtgggtgggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573449_573501
seq2: B6Ng01-014B24.b_62_114 (reverse)

seq1  AGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATAT  50
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  AGTTGGCCATCATTGGAAAGAGAGGCCCATTGGTCTTGCAAACTTTATAT  50

seq1  GCC  53
      |||
seq2  GCC  53

seq1: chr4_16146125_16147213
seq2: B6Ng01-014B24.g_63_1127

seq1  GAATTCCAAATGTTCCTCAACTAAGAATGCATAAGTTGTACATCTATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGTTCCTCAACTAAGAATGCATAAGTTGTACATCTATGCA  50

seq1  TAGAGTTCTACTTAGTAATAAGAAATAATGTGCTATTATGTGAGTGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTCTACTTAGTAATAAGAAATAATGTGCTATTATGTGAGTGAAAG  100

seq1  ACCCCATTATCAAAATATTATATAACATGATTCTATTTATTTAATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTATCAAAATATTATATAACATGATTCTATTTATTTAATATTTT  150

seq1  AGAAAACACGGTGGCAGAAAATGGATTGACTACAAAAGAGAAATAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACGGTGGCAGAAAATGGATTGACTACAAAAGAGAAATAAAATA  200

seq1  TTAATTTTCATTCTTAGTTGTGAACTCATAAAATGGAGTACTTCAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTCATTCTTAGTTGTGAACTCATAAAATGGAGTACTTCAAACTG  250

seq1  GTAAATTTTATTGAACGTAAATTATATTTTGATACTGTGGACTGAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTTATTGAACGTAAATTATATTTTGATACTGTGGACTGAAAATA  300

seq1  CTTAGGGGAGAAATTAAAACTTAGATAAAAAAATAAGGAACACTCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGGAGAAATTAAAACTTAGATAAAAAAATAAGGAACACTCTTCAG  350

seq1  GATTGTTAAGGACTTTGTGCAGTGTAATTTTATTTCAAATTGACACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTAAGGACTTTGTGCAGTGTAATTTTATTTCAAATTGACACAGGT  400

seq1  AGAGTTATCAGAGTGGAAAGAGCCTCGACTGAGAAAACACCTCCATAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATCAGAGTGGAAAGAGCCTCGACTGAGAAAACACCTCCATAAGG  450

seq1  TCAGGCTGAAGGCAAGTATGTAAGGCATTTTATTATCAGGGGTTGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGAAGGCAAGTATGTAAGGCATTTTATTATCAGGGGTTGATGTG  500

seq1  GGAGAGCCTAGCCCACTGTGGGAAGGGCCACCCCTGGGACCTTGGTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCTAGCCCACTGTGGGAAGGGCCACCCCTGGGACCTTGGTCCTG  550

seq1  GGTTCTATAAGAAAGCAGGCTGAGCAAGCCATGAGGAGCAAACCAATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATAAGAAAGCAGGCTGAGCAAGCCATGAGGAGCAAACCAATAAG  600

seq1  CAGCATCCCTCCATGGCTTCTGCATCAGCTCTTGCCTCCAGGTTCCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCCTCCATGGCTTCTGCATCAGCTCTTGCCTCCAGGTTCCTAGC  650

seq1  CTGCTTGAGTTCCTGCCCTCACTGCTTTTGATGATGAACTATTATATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGAGTTCCTGCCCTCACTGCTTTTGATGATGAACTATTATATGAA  700

seq1  ATTGTGAGTGAAATTAATCCTTTCCTACTCAAGTTAGTTTTGGCCATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGTGAAATTAATCCTTTCCTACTCAAGTTAGTTTTGGCCATGGT  750

seq1  GTTTCATCAGAGCAATAGTAACCCTAATTAAGATATAGTTTTTCAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCAGAGCAATAGTAACCCTAATTAAGATATAGTTTTTCAATAAA  800

seq1  ACTCCAG-TTGCTCAGAAAATAATCCTGGCCACTGACAAAGTGGATTTCA  849
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTCCAGTTTGCTCAGAAAATAATCCTGGGCACTGACAAAGTGGATTTCA  850

seq1  CAAAGTTAAAAAGCACCACAAAGCAAAAGGAACAGTTAATCAAATAAAGA  899
      ||||||| ||||||| ||| |||| ||||||||||||||||||   ||| 
seq2  CAAAGTT-AAAAGCA-CAC-AAGC-AAAGGAACAGTTAATCAA--TAAGG  894

seq1  AATCGTCTAAATTGCACGTATATCTCAAAAGTGTGTGTGTGTGTGTACTG  949
      |||||||| ||||||||||||||||| |||||||||||||||||||||| 
seq2  AATCGTCT-AATTGCACGTATATCTC-AAAGTGTGTGTGTGTGTGTACT-  941

seq1  GCTAGTTTTGTATCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAG  999
      ||||| |||||||||||||||||||||||||| |||| |||||||  |||
seq2  GCTAG-TTTGTATCAACTTGACACAGCTGGAG-TATC-CAGAGAA--GAG  986

seq1  CTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTC  1049
      | ||||| |||||| || || ||||| |||  ||||||| |||||||| |
seq2  C-TCAGTGGAGGAATTG-CTTCATGA-ATC--ACTGTAA-GCATTTTC-C  1029

seq1  AATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGAC  1089
      |  || |||||||  |||||||||||||||||||||||||
seq2  A--TAATGATCAA--GGGAAAGGCCCCTTGTGGGTGGGAC  1065