BAC Information

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BAC

Clone NameB6Ng01-014D12
Chromosome1 (Build37)Y (Build37)
Map Location 53,940,309 - 53,941,2241,870,434 - 1,870,574
singlet/doubletsingletsinglet
Overlap geneHecw2
Upstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014D12.bB6Ng01-014D12.g
ACCDH848823DH848824
length915344
definitionDH848823|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D12, 5' end.DH848824|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,940,309 - 53,941,224)(1,870,434 - 1,870,574)
sequence
gaattcacttctgtaattttattactctctataagactgtggactgctga
ggggatgccctaagaaagaaaagttcaaaatccatacttgcataattttt
ataattgttggtgatcaggaatagcatgctcacgtatagaaagcactgaa
gctcatggtggagttagcttggggaaaccaggattctaacctaggtttca
tttacaggccatacttacaatgttgcctagtttatattcttcagaaatat
tttttaaaggtaagggtaacataaaatactgtcattttgctcactactta
gagagggcttttagatctgagcagcgaggaacagacctcaagggacagga
gggctgaatgtgaaaggatctaagaatttaattggaaaatatgaactaga
gaaatcaaattacagcaagaaagtcacatagtcgagagtacaaagaccaa
tttcatacatcacacaattattcatcaaattagcgtcctgccaggttatt
acacaggtctgtgctgtagaattacatggagacaatcaaagaaaacactt
gggcttacccatgtttctggagagggcatgggaagtaagtcaggagaatg
acttcaaagatggaagaggagtgagagtgggtgttcaggtaggtgtttga
ttgagttctggcattttgtattatataaaactttacatcatttgggtgaa
aacaaggttggtagaaataagtggatcagtctttaagaaccacagatata
tactagaatcattgacaaatgcatttccaccattaaaggtaatgtataga
gacaatctctgtgtactgtatggaagtacagtactgtatcactgtatcac
ctgtcaataaaacactgattggtgaaggagctgaagcagaaataggaggt
tggggttcagagaga
tttctttagctctgagccccatcttttaagggggttatttgattttctgg
agtccaccttcttgagttctttatatatattgcatattagtcccctatct
gatttaagataggtaaagatcctttcccaatctgttggtggcctttttgt
cttattgacggtgtcttttgccttgcagaagctttgcagtttcatgaggt
cccctctagctgcatatgtatcaaaagatggcctagtcggccatcactgg
aaagagatgtccattggacaggcaaactttatatgccccagtacagggga
acgccaaggccaaaaagtgggaatgggtgggtaggggagtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53940309_53941224
seq2: B6Ng01-014D12.b_47_961

seq1  GAATTCACTTCTGTAATTTTATTACTCTCTATAAGACTGTGGACTGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTGTAATTTTATTACTCTCTATAAGACTGTGGACTGCTGA  50

seq1  GGGGATGCCCTAAGAAAGAAAAGTTCAAAATCCATACTTGCATAATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGCCCTAAGAAAGAAAAGTTCAAAATCCATACTTGCATAATTTTT  100

seq1  ATAATTGTTGGTGATCAGGAATAGCATGCTCACGTATAGAAAGCACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTTGGTGATCAGGAATAGCATGCTCACGTATAGAAAGCACTGAA  150

seq1  GCTCATGGTGGAGTTAGCTTGGGGAAACCAGGATTCTAACCTAGGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGTGGAGTTAGCTTGGGGAAACCAGGATTCTAACCTAGGTTTCA  200

seq1  TTTACAGGCCATACTTACAATGTTGCCTAGTTTATATTCTTCAGAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGCCATACTTACAATGTTGCCTAGTTTATATTCTTCAGAAATAT  250

seq1  TTTTTAAAGGTAAGGGTAACATAAAATACTGTCATTTTGCTCACTACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGTAAGGGTAACATAAAATACTGTCATTTTGCTCACTACTTA  300

seq1  GAGAGGGCTTTTAGATCTGAGCAGCGAGGAACAGACCTCAAGGGACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGCTTTTAGATCTGAGCAGCGAGGAACAGACCTCAAGGGACAGGA  350

seq1  GGGCTGAATGTGAAAGGATCTAAGAATTTAATTGGAAAATATGAACTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAATGTGAAAGGATCTAAGAATTTAATTGGAAAATATGAACTAGA  400

seq1  GAAATCAAATTACAGCAAGAAAGTCACATAGTCGAGAGTACAAAGACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAATTACAGCAAGAAAGTCACATAGTCGAGAGTACAAAGACCAA  450

seq1  TTTCATACATCACACAATTATTCATCAAATTAGCGTCCTGCCAGGTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACATCACACAATTATTCATCAAATTAGCGTCCTGCCAGGTTATT  500

seq1  ACACAGGTCTGTGCTGTAGAATTACATGGAGACAATCAAAGAAAACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTCTGTGCTGTAGAATTACATGGAGACAATCAAAGAAAACACTT  550

seq1  GGGCTTACCCATGTTTCTGGAGAGGGCATGGGAAGTAAGTCAGGAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTACCCATGTTTCTGGAGAGGGCATGGGAAGTAAGTCAGGAGAATG  600

seq1  ACTTCAAAGATGGAAGAGGAGTGAGAGTGGGTGTTCAGGTAGGTGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAGATGGAAGAGGAGTGAGAGTGGGTGTTCAGGTAGGTGTTTGA  650

seq1  TTGAGTTCTGGCATTTTGTATTATATAAAACTTTACATCATTTGGGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTGGCATTTTGTATTATATAAAACTTTACATCATTTGGGTGAA  700

seq1  AACAAGGTTGGTAGAAATAAGTGGATCAGTCTTTAAGAACCACAGATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTTGGTAGAAATAAGTGGATCAGTCTTTAAGAACCACAGATATA  750

seq1  TACTAGAATCATTGACAAATGCATTTCCACCATTAAAGGTAATGTATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAATCATTGACAAATGCATTTCCACCATTAAAGGTAATGTATAGA  800

seq1  GACAATCTCTGTGTACTGTATGGAAGTACAGTACTGTATCACTGTATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCTCTGTGTACTGTATGGAAGTACAGTACTGTATCACTGTATCAC  850

seq1  CTGTCAATAAAACACTGATTGGTGAAGGAGCTGAAGCAAGAAATAGGAGG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGTCAATAAAACACTGATTGGTGAAGGAGCTGAAGC-AGAAATAGGAGG  899

seq1  TTGGGGTTCAGAGAGA  916
      ||||||||||||||||
seq2  TTGGGGTTCAGAGAGA  915

seq1: chrY_1870434_1870574
seq2: B6Ng01-014D12.g_277_417

seq1  CTCTTGCTGCATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA  50
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA  50

seq1  GAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACG  100
      |||| | |||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGATGTCCATTGGACAGGCAAACTTTATATGCCCCAGTACAGGGGAACG  100

seq1  CCAGGGCCAAAAAGGGGCAGTGGGTGGGTAGGGGAGTGGGG  141
      ||| |||||||||| || | ||||||||||||||||||| |
seq2  CCAAGGCCAAAAAGTGGGAATGGGTGGGTAGGGGAGTGGTG  141