BAC Information

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BAC

Clone NameB6Ng01-014L21
ChromosomeY (Build37)
Map Location 1,870,344 - 1,870,538
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014L21.bB6Ng01-014L21.g
ACCDH849199DH849200
length9181,217
definitionDH849199|Mus musculus domesticus DNA, BAC clone: B6Ng01-014L21, 5' end.DH849200|Mus musculus domesticus DNA, BAC clone: B6Ng01-014L21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattctctatgatgttcataccaggcttatttatttattttgtta
atatttttattattacatattttcctcaattacacttagaatatacattt
cgaaagtccccacaccctctcctcccacttccctacccttgcatttccat
tttttttttattcctggcattcccctgtactgtggcatataaagtttgca
tgtccaatgggcctctctttccagtgatggccgactaggccatcttttga
tacatatgcagctagagtcaagagcttcggggtactggttagttcctaat
gttattggacctacagcagatctctttagctccttggatactttctctag
cttttccactgggggctctgtgctccatccaatagctgactgtgagcatc
tacttatgtatttgctaggccccagccttgtctcaaaagagacagctata
tctgggtcttttcagcaaaatcttgctagtgtatgcaatggtgtcatcgt
ttggttgctaattatgtgatggatggacatggcagtctctagatggttga
tcattttgtctcagctccaaactttgtctctgtaacagtctggcggttcc
tcaggaatttggacatggtactagtagaggatcccacaatacctctcctg
ggcatatatccagaagatgtcccaaccggtaagaagaacacaagctccac
tacgtacataccaaccttatttataaaagacagaggctggaaagaactca
gatgcccctcaacattggaatgagtacaaaaaatgtggtacatttacaca
atggagtactactcagctattaaaaaaagaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtacacaatcacaaa
gaactcaatgacatttac
gaattcagttccccaataaaaagacatatactgacagactggctacaaaa
acaggatccaatagtctgctgcttacaggaaacccatatcaggaaaaaag
acagacactatctcagagtgaaaggctggaaaataattttccaaaaaatg
gtctgaagaaatcagctggagtaaccattcaaatatcgtttaaaattgat
ttcaaacctaaagttatcaaaaaagacaaagaaggacacttcacactcat
caaaggtaaaatcctccaagaggaagtctcaattctgaatatgtatgctc
caaatacaagggcagtcccattcattaaagaaagctcaaagcacacattg
cagctcatacaataatagtgggaggcttcaacaaaccacttttatcaatg
gacaaatcttggaaacagaaactaaacagggacacagtgaaactaacaga
agttattaaacaaatggacttcatagatatctacagaacgttttatcctg
aaacaaaaggatataacttcttctcagcacatcatggtaccttttccaaa
attgaccatataattggtcacaaaacaggcctcaactgatcaaaaatatt
gcaattgtccaaagcatgctatcagaccaccaaggactaaggctgattga
tcttcaataacaacataaataatggaaagccaacattcatgttgaaaatg
aacaaaagtcttttcagtgataccttggtcaaggaatgaataaagaaaga
aattaaagacattttagagtttaatgaaaataaagctacaatatacccta
acttatgagaatcaatgaaatgtttactaagagggaaactcatagatttg
agtgcctccaaaaagaaaccagagagagcacatacaagcagcttgaaaca
acgaaaaatctccagaataaagaagcaaattcatcagaggagtagatgag
gaatatcaacctcagggtgaaatacccagtgaaaaagaagaacctcctaa
taatcactcaagagatttgttctttggagaaatcaaaaagatgataatcc
tagcctagccatccttaggccacgaagacgcatcctataacaaatccaat
tgaagagacttaatacgattctgagaaaacaaacccctcgaatctctctc
ccacgtattctcaagagaccagggagtactcgtggacaaatgttgacaag
atttcctctctcgttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870344_1870538
seq2: B6Ng01-014L21.b_209_398 (reverse)

seq1  AGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTG  50
      |||||||||||||| |||||||||||||| ||||||     || ||||| 
seq2  AGCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTG-----CTGTAGGTC  45

seq1  GAACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGC  100
       || ||||||| |||||||||| ||||||  ||||||||||||| |||||
seq2  CAATAACATTAGGAACTAACCAGTACCCCGAAGCTCTTGACTCTAGCTGC  95

seq1  ATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  145

seq1  TTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGG  195
      |||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TTGGACATGCAAACTTTATATGCCACAGTACAGGGGAATGCCAGG  190