BAC Information

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BAC

Clone NameB6Ng01-015C24
Chromosome7 (Build37)Y (Build37)
Map Location 98,224,833 - 98,225,9631,870,346 - 1,870,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream geneDlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015C24.bB6Ng01-015C24.g
ACCDH849516DH849517
length1,096438
definitionDH849516|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C24, 5' end.DH849517|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,224,833 - 98,225,963)(1,870,346 - 1,870,575)
sequence
gaattcagtgaaatagttttaatcttccagaccaagacaaagggcatgct
attggggtcattagaaatggtgacttattttacctcttagaattttctgg
atacttaatggctgataaaaggtactttgggaaagaagtgagcataattg
gattgctaccctgagttaaaagaaatacatttaattgttaaattgtttat
ttcaagtgggcatattacaagctctgtaaggttaccttctgtgggcgatg
gatgctcaagagacaatgtataaatatgcagtttcctgagtctacttctc
agtgactggtttatcagaaagtgaagttcagtcaagcattttcaagagac
gaagcagtaacacttaagtcataaaatctttaatggagaaagaaaacagt
ttattctggtatatataattagaaagatctgccttctttagaatgagctg
catataatttgcctattctttatacagttctgaatatgaagatcaaaata
atcatacactcttttaaatgtctaatctgttcatagctctgaaagttgaa
tccatattctatgtctggagaaacagaccagatagaatgaatttatatat
gtggcttacaggttatggtcccgctattctaacaatggttgtctctcagt
gagaagagctaggaaccagtagctgtccagcacaggagactgaatatctt
agctgctcttaagtatatacagggaatcctgacaaagtaggttctcatgt
caggaaggaatgagcaaagagcagtgattccttcttccaagtcctttatc
tagctgccaccacaagggtgggccaagatttaaggtaggtcttcccactt
caagtgattcaagcaagaaaatccctcatgaggttttagtaaatcctgaa
tatactcagtgacatcagatagctatctatgcatagattataacagagat
ataatatagatatttacttatgttatcctctggtctaaatatcctatcct
ggatatgtatatacacaaatgtggcttactcatgtttttatccaggagct
tacagcaagtaccttattctgaggtagcatgccctctacatgaagt
tttgttcagttctgagccccatttttaatggggttatttgattttctgaa
gtccaccttcttgagttctttatatatgttggatattagtccctctagga
accagatgtagctgtctcttgtgagactatgcagaggcctagcaaacaca
gaagtggatgctcacagtcagctattggatggatcatagggctcccaata
gaggagctagagaaagtacccaaggagctaaagagatctgcaaccctata
ggtggaacaacattatgtactaaccagtaccctggagctcttgactctag
ctgcatatgtatcaaaagatggcctagtcggccatcactggaaagagatg
cccattggacatgcaaactgtatatgccccagtacaggggaacgccaggg
cccaaaaaaatcggaatgggtgggtagggaagtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_98224833_98225963
seq2: B6Ng01-015C24.b_45_1140

seq1  GAATTCAGTGAAATAGTTTTAATCTTCCAGACCAAGACAAAGGGCATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAAATAGTTTTAATCTTCCAGACCAAGACAAAGGGCATGCT  50

seq1  ATTGGGGTCATTAGAAATGGTGACTTATTTTACCTCTTAGAATTTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTCATTAGAAATGGTGACTTATTTTACCTCTTAGAATTTTCTGG  100

seq1  ATACTTAATGGCTGATAAAAGGTACTTTGGGAAAGAAGTGAGCATAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAATGGCTGATAAAAGGTACTTTGGGAAAGAAGTGAGCATAATTG  150

seq1  GATTGCTACCCTGAGTTAAAAGAAATACATTTAATTGTTAAATTGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTACCCTGAGTTAAAAGAAATACATTTAATTGTTAAATTGTTTAT  200

seq1  TTCAAGTGGGCATATTACAAGCTCTGTAAGGTTACCTTCTGTGGGCGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGGGCATATTACAAGCTCTGTAAGGTTACCTTCTGTGGGCGATG  250

seq1  GATGCTCAAGAGACAATGTATAAATATGCAGTTTCCTGAGTCTACTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAAGAGACAATGTATAAATATGCAGTTTCCTGAGTCTACTTCTC  300

seq1  AGTGACTGGTTTATCAGAAAGTGAAGTTCAGTCAAGCATTTTCAAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGGTTTATCAGAAAGTGAAGTTCAGTCAAGCATTTTCAAGAGAC  350

seq1  GAAGCAGTAACACTTAAGTCATAAAATCTTTAATGGAGAAAGAAAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTAACACTTAAGTCATAAAATCTTTAATGGAGAAAGAAAACAGT  400

seq1  TTATTCTGGTATATATAATTAGAAAGATCTGCCTTCTTTAGAATGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGGTATATATAATTAGAAAGATCTGCCTTCTTTAGAATGAGCTG  450

seq1  CATATAATTTGCCTATTCTTTATACAGTTCTGAATATGAAGATCAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATTTGCCTATTCTTTATACAGTTCTGAATATGAAGATCAAAATA  500

seq1  ATCATACACTCTTTTAAATGTCTAATCTGTTCATAGCTCTGAAAGTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACACTCTTTTAAATGTCTAATCTGTTCATAGCTCTGAAAGTTGAA  550

seq1  TCCATATTCTATGTCTGGAGAAACAGACCAGATAGAATGAATTTATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTCTATGTCTGGAGAAACAGACCAGATAGAATGAATTTATATAT  600

seq1  GTGGCTTACAGGTTATGGTCCCGCTATTCTAACAATGGTTGTCTCTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTACAGGTTATGGTCCCGCTATTCTAACAATGGTTGTCTCTCAGT  650

seq1  GAGAAGAGCTAGGAACCAGTAGCTGTCCAGCACAGGAGACTGAATATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGCTAGGAACCAGTAGCTGTCCAGCACAGGAGACTGAATATCTT  700

seq1  AGCTGCTCTTAAGTATATACA-GGAATCCTGACAAAGTAGGTTCTCATGT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCTGCTCTTAAGTATATACAGGGAATCCTGACAAAGTAGGTTCTCATGT  750

seq1  CAGGGAAGGAATGAGCAAAGAGCAGTGATTCCTTCTTCCAAGTCCTTTAT  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GGAAGGAATGAGCAAAGAGCAGTGATTCCTTCTTCCAAGTCCTTTAT  799

seq1  CTAGGCTGCCACCACAAGGGTTGGCCAAGATTTAAGGTAGGTCTTCCCAC  849
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTA-GCTGCCACCACAAGGGTGGGCCAAGATTTAAGGTAGGTCTTCCCAC  848

seq1  TTCAAGTGATTCAAGCAAGAAAAATCCCTCATGAGGTTTTAGTTAAATCC  899
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  TTCAAGTGATTCAAGCAAG-AAAATCCCTCATGAGGTTTTAG-TAAATCC  896

seq1  TG-ATATACTCAAGTTGACAATCAAGAATAGCTATCTTATGCATAGAATT  948
      || |||||||||   |||| ||||   ||||||||| ||||||||||  |
seq2  TGAATATACTCA--GTGAC-ATCA--GATAGCTATC-TATGCATAGA--T  938

seq1  TATAACAGAAGATTAATAATATTAGATATTTTACTTATGTTTATCCTCTG  998
      |||||||| ||||  |||||| |||||| |||||||||| ||||||||||
seq2  TATAACAG-AGAT--ATAATA-TAGATA-TTTACTTATG-TTATCCTCTG  982

seq1  GTCCTAAAAATTAATTCCTATCTTGATTATGTATATACACAAAATGTGCT  1048
      || ||||| |     ||||||| ||  ||||||||||||| |||||||  
seq2  GT-CTAAATA-----TCCTATCCTGGATATGTATATACAC-AAATGTGGC  1025

seq1  TTACTTCATTGTTTTTTTTATCCCAAGAGCTTTACAGAGCAAGTACTCTT  1098
      |||| |||    | ||||||| ||| ||||||   | ||||||||| |||
seq2  TTAC-TCA----TGTTTTTAT-CCAGGAGCTT---ACAGCAAGTAC-CTT  1065

seq1  ATCCTGAATGTAGCCATGCCCTCTACATGAAGT  1131
      || ||| | |||| |||||||||||||||||||
seq2  ATTCTG-AGGTAG-CATGCCCTCTACATGAAGT  1096

seq1: chrY_1870346_1870575
seq2: B6Ng01-015C24.g_278_509

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      ||||||||||| |||||||| |||||  |||||||||||||| |||||||
seq2  ACAACATTATGTACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGATGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCC--AA  198
      ||||||||||||| ||||||||||||||||||||||||||||||||  ||
seq2  GGACATGCAAACTGTATATGCCCCAGTACAGGGGAACGCCAGGGCCCAAA  200

seq1  AAAGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  230
      |||   | | ||||||||||||| ||||||||
seq2  AAAATCGGAATGGGTGGGTAGGGAAGTGGGGG  232