BAC Information

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BAC

Clone NameB6Ng01-016E23
ChromosomeY (Build37)10 (Build37)
Map Location 1,870,346 - 1,870,43292,143,930 - 92,144,847
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016E23.bB6Ng01-016E23.g
ACCDH850309DH850310
length500922
definitionDH850309|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E23, 5' end.DH850310|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,432)(92,143,930 - 92,144,847)
sequence
gaattctttgttcagttctgagccccatttttaatggggttttagcccca
aacctaggatacccaagatataagatataatttgctaaacacatgaaact
caagaagaatgaagactgaagtgtggacactatgcccctccttagatttg
ggaacaaaacacccatggaaggagttacagagacggagtttggagctgag
atgaaaggatggaccatgtagagactgccatatccagggatccaccccat
aatcagcatccaaacgctgacaccattgcatacactagcaagattttatt
gaaaggacgcagatgtagctgtctcttgtgagactatgccggggcccagc
aaacacagaagtggatgctcacagtcagctaatggatggatcatagggct
cccaatggaggagctagagaaaatagccaaggagctaaagggatctgcaa
ccctataggtggaacaacattatgagctaaccagtaccccggagctcttg

gaattctataggggccataactattcaaatcaaatttgtcgaggaagtgg
aacaactgtgagttttatactcagaataaagaatggtacagtcattctag
gaaacactttttaactgtttctcccatcacccaccagtcatgtgcctcag
ctgttctactccagacacttaaacaaatgttgcacaggaatggttataac
agctattgcattatccaaagtctagaagccatccaaaacacttgaaaatg
agtaaatgactaaacaaatcacagtatggggaatggaaccccaccagcta
tatgaaaggaagaactattaacatagattaatgtggagtagacacaaaat
atatgggtagaaaccagtgctatgtggccatgtgtagttctagaacatgc
aaacttaacctggcaccagtcagtggttgtagacagtagggagtggcgtc
agagaaggatgccaaagggtcatgggaaggtttttgtcactgatgactgc
ctagtctgggttttgatgatgcttctgatatggataattattttaatatc
agctgtttcaacctgagatggtcctcacagcccagccagcctcgaactcc
ttatgtaggcaagattgaccttgacctttggatcatctttaccctcccat
gtgcccccccccaaagtgatcgcttctaatgtttggcataagtaggttga
aatgacttctgcctaccactcacaccattaatattgttcaaaactgtgaa
ggatctataaactgaaagaatcatttgacatcagcttagcactcaggtct
tagtttgctctggctgttgctagtaatacactgacagatgtgattaaggg
aggaagagcttacttggcttcatgattccagtcacagtcttgtcattgtg
gaagaagcaaggtgattggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870432
seq2: B6Ng01-016E23.b_457_543

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAATAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTG  87
      |||||||||||| ||||||| |||||| |||||||||
seq2  ACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTG  87

seq1: chr10_92143930_92144847
seq2: B6Ng01-016E23.g_65_986 (reverse)

seq1  GTTCCAATCACCTTGCTTC-TCCACAATGAC-AGACTGTGACTGGAATCA  48
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  GTTCCAATCACCTTGCTTCTTCCACAATGACAAGACTGTGACTGGAATCA  50

seq1  TG-AGCCAAGTAAGCTCTTCCTCCCTT-ATCACATCTGTCAGTGTATTAC  96
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAAGCCAAGTAAGCTCTTCCTCCCTTAATCACATCTGTCAGTGTATTAC  100

seq1  TAGCAACAGCCAGAGCAAACTAAGACCTGAGTGCTAAGCTGATGTCAAAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACAGCCAGAGCAAACTAAGACCTGAGTGCTAAGCTGATGTCAAAT  150

seq1  GATTCTTTCAGTTTATAGATCCTTCACAGTTTTGAACAATATTAATGGTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTCAGTTTATAGATCCTTCACAGTTTTGAACAATATTAATGGTG  200

seq1  TGAGTGGTAGGCAGAAGTCATTTCAACCTACTTATGCCAAACATTAGAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGTAGGCAGAAGTCATTTCAACCTACTTATGCCAAACATTAGAAG  250

seq1  CGATCACTTTGGGGGGGGGCACATGGGAGGGTAAAGATGATCCAAAGGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCACTTTGGGGGGGGGCACATGGGAGGGTAAAGATGATCCAAAGGTC  300

seq1  AAGGTCAATCTTGCCTACATAAGGAGTTCGAGGCTGGCTGGGCTGTGAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAATCTTGCCTACATAAGGAGTTCGAGGCTGGCTGGGCTGTGAGG  350

seq1  ACCATCTCAGGTTGAAACAGCTGATATTAAAATAATTATCCATATCAGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCAGGTTGAAACAGCTGATATTAAAATAATTATCCATATCAGAA  400

seq1  GCATCATCAAAACCCAGACTAGGCAGTCATCAGTGACAAAAACCTTCCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATCAAAACCCAGACTAGGCAGTCATCAGTGACAAAAACCTTCCCA  450

seq1  TGACCCTTTGGCATCCTTCTCTGACGCCACTCCCTACTGTCTACAACCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTTGGCATCCTTCTCTGACGCCACTCCCTACTGTCTACAACCAC  500

seq1  TGACTGGTGCCAGGTTAAGTTTGCATGTTCTAGAACTACACATGGCCACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTGCCAGGTTAAGTTTGCATGTTCTAGAACTACACATGGCCACA  550

seq1  TAGCACTGGTTTCTACCCATATATTTTGTGTCTACTCCACATTAATCTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGGTTTCTACCCATATATTTTGTGTCTACTCCACATTAATCTAT  600

seq1  GTTAATAGTTCTTCCTTTCATATAGCTGGTGGGGTTCCATTCCCCATACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGTTCTTCCTTTCATATAGCTGGTGGGGTTCCATTCCCCATACT  650

seq1  GTGATTTGTTTAGTCATTTACTCATTTTCAAGTGTTTTGGATGGCTTCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTGTTTAGTCATTTACTCATTTTCAAGTGTTTTGGATGGCTTCTA  700

seq1  GACTTTGGATAATGCAATAGCTGTTATAACCATTCCTGTGCAACATTTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGATAATGCAATAGCTGTTATAACCATTCCTGTGCAACATTTGT  750

seq1  TTAAGTGTCTGGAGTAGAACAGCTGAGGCACATGACTGGTGGGTGATGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTCTGGAGTAGAACAGCTGAGGCACATGACTGGTGGGTGATGGG  800

seq1  AGAAACAGTTAAAAAGTGTTTCCTAGAATGACTGTACCATTCTTTATTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGTTAAAAAGTGTTTCCTAGAATGACTGTACCATTCTTTATTCT  850

seq1  GAGTATAAAACTCACAGTTGTTCCACTTCCTCGACAAATTTGATTTGAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAAAACTCACAGTTGTTCCACTTCCTCGACAAATTTGATTTGAAT  900

seq1  AGTTATGGCCCCTATAGAATTC  918
      ||||||||||||||||||||||
seq2  AGTTATGGCCCCTATAGAATTC  922