BAC Information

Click to search

BAC

Clone NameB6Ng01-016N04
ChromosomeY (Build37)
Map Location 1,870,346 - 1,870,568
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016N04.bB6Ng01-016N04.g
ACCDH850677DH850678
length39577
definitionDH850677|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N04, 5' end.DH850678|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
caccccataatcagcatccaaatgctgacaccattgcatacactagcaag
attttatcgaaaggacccagatgtagctgtctcttgtgagactatgccgg
ggcctagcaaacacagaagtggatgctcacagtcagctaatggatggatc
acagggctcccaatggaggagctagagaaagtagccaaggagctaaaggg
atctgcaaccctataggcggaacaacattatgaactaaccagtaccccgg
agctcttgactctagctgcatatgtatcaaaagatggcctagtcagccat
cactggaaagagaggcccattggacacgcaaactttatatgccccagtac
aggggaaggccagggccaaaaagggggagtgggtgggtaggggat
aagggcagggaggcgtgagtgggtgggggaaacaccctcttagaagcagg
gggaggggtgttgggctagggggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870568
seq2: B6Ng01-016N04.b_225_447

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGCGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  GGACACGCAAACTTTATATGCCCCAGTACAGGGGAAGGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGA  223
      ||||| |||||||||||||||||
seq2  AGGGGGAGTGGGTGGGTAGGGGA  223