BAC Information

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BAC

Clone NameB6Ng01-017A21
ChromosomeY (Build37)1 (Build37)
Map Location 1,120,586 - 1,120,998148,396,628 - 148,397,864
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017A21.bB6Ng01-017A21.g
ACCDH850845DH850846
length9761,220
definitionDH850845|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A21, 5' end.DH850846|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,120,998)(148,396,628 - 148,397,864)
sequence
gaattcaactttcctgaaccttctacaacattttttttcagttgctttcc
caatcttagccattctttttttttattattttattttattaggtattttc
ctcatttacatttccaatgctatcccaaaagtcccccataccctcccccc
cacacacactcccctacccacccactcccactttttggccctggtgttcc
cctgtactggggcacataaagtttgcaagtccaatgggcctctctttcca
gtgatggccgactaggccatcttttgatacatatgcagcttgagacaaga
gctccgggatactggttagttcataatgttgttccacctatagggttgca
gatccctttagctccttgggtattttctctagctcctccattgggggccc
tgtgatccatccaatagctgactatgagcatccacttatgtgtttgctag
gccccagcttagtctcacaagagacagctatatctggatcctatcagcac
aatcttgctagtgtatgcaatggtgtcagcgtttggagactgattatggg
atggatccccggatatggcagtctctagatggtccatccttttctcttag
ctccaaacattgtctctgtaactccttccatgggtgttttgttcccaatt
ctaagaaggggcaaagtgtccacactttggtcttcgttcttcttgagatt
catgtgttttgcaaattgtaacttatatcttgggtattctaagtttctgg
gctaatatccgcttatcagtgagtacatatcatttgaattcttttgtgat
tgggttacctcactcaggataatgccctccaggtccaaccatttgcctag
gaatttcataaattcattctttttaatagctgagtagtactccactgtgt
aaatgtaccacaatttttgtatccattcttctgttgaggggcatctgggt
tctttccagcttctggctattataaa
gaattcttagttatatataatataggctgacagaataaggccagcaaaag
acttgtggtgataatgatgtgttttaaatgtaaacaattctgctattatt
catactgatcacaaaatatacctgtaagcaaatttactcttactttataa
atgtctttacaaaataaaatatccccattgccaaggtaaatatatggttc
agtctaactctttcacattgtctgcaccatttcccagatttctccatatt
tttcacaactgtcttttgttagtgaacattattttcctttcattgaacat
aagcatgcattatccacaatctattgtattgtgactccataagaatgttc
cagatactaatgtgtaaaagtaactttaatctacatatatagttgtcatc
tcaaaggcttactgctgaataagctttttagttctttctgaactctggct
ggctggttcaactcagctgttttgcttcacattcctctccaacctgattg
gttcagtctggctgtttggccttaaactaactctggaaatttgccctaat
cttttagatcctacatattttctggcttccactgtctctgctgacatgca
cagcatgaacttcacaaaataaaccaatgtgactgcattcacctgaattg
tactgacctgagtaattgtctctgtgttgtactctttagtagtctctcat
tcctgactcttctcatgagagctggatgtatcctatctctacctcacttt
agccaatctttctctgattcatcattttgtctgctcctcaattagatgac
actttcaaatatgggtgcttccttctacaaactagccttacttttgagag
tttgagattaaaggtgtatatgtaggacatttctgtattcttgcattaag
ggattaatggtgtgatgttgtctgtattcctccagattacatagacctag
aaagtcttttgatgtgatcccatgccagagcagcaatactgctggattaa
aattcctctatactatgaacctagatgcattattattattatatacagtg
atggaggatattaacccagaaacttggggactgccagattgttacgagtg
tcatccatagatgacccattatctcatacctggatagtgtcatgctagaa
agtgccttagtaaagacatagttcagttagttagtacagctcaacagtcg
tggacgattatctcaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1120998
seq2: B6Ng01-017A21.b_110_530

seq1  -TTTTTTTTTCCATT---TTTTATTAGGTATTTAACTCATTTACATTTCC  46
       ||||||||   |||   |||||||||||||||  |||||||||||||||
seq2  TTTTTTTTTATTATTTTATTTTATTAGGTATTTTCCTCATTTACATTTCC  50

seq1  AATGCTATACCAAAAGTCCCCCATA----TCCACCCACCCCCACTCCCCT  92
      |||||||| ||||||||||||||||     || ||||| | |||||||||
seq2  AATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCACACACACTCCCCT  100

seq1  GCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCAT  142
       ||||||||||||| ||||||||||||||| |||||||||||||||||| 
seq2  ACCCACCCACTCCCACTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCAC  150

seq1  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  200

seq1  GCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG  242
      |||||||||||||| |||||||||| ||| ||||||||||||| ||||||
seq2  GCCATCTTTTGATACATATGCAGCTTGAGACAAGAGCTCCGGGATACTGG  250

seq1  TTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCC  292
      |||| |||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCC  300

seq1  TTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATT  342
      |||| || |||||||||||||||||||||| ||||| ||||||||||| |
seq2  TTGGGTATTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAAT  350

seq1  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCT  392
      |||||||| ||||||||||||| |||||||||| |||||| || ||||||
seq2  AGCTGACTATGAGCATCCACTTATGTGTTTGCTAGGCCCCAGCTTAGTCT  400

seq1  CACAAGAGACAGCTACATCTG  413
      ||||||||||||||| |||||
seq2  CACAAGAGACAGCTATATCTG  421

seq1: chr1_148396628_148397864
seq2: B6Ng01-017A21.g_66_1285 (reverse)

seq1  AATTTAGATAATATTGT-CACGACTGTTTTAGCTTGTTATTACTATTACT  49
      ||||| || |  || || |||||||| || ||| |||  | ||||  |||
seq2  AATTTTGAGATAATCGTCCACGACTG-TTGAGC-TGTACTAACTA--ACT  46

seq1  GAACTTATATGTTTACTTTATCATAGGCA-TTTCTAGACATGACAACATA  98
      |||| ||| | ||||||       ||||| ||||||| |||||||  || 
seq2  GAAC-TATGTCTTTACT------AAGGCACTTTCTAG-CATGACACTATC  88

seq1  TCAGTAT-AGATAATTGGGTCATCTATGGAGTAACACTCTGTAACAATCT  147
         |||| |||||| ||||||||||||||| | |||||| ||||||||||
seq2  CAGGTATGAGATAA-TGGGTCATCTATGGA-TGACACTC-GTAACAATCT  135

seq1  GCAAGTCCCCAAGTTTCCTTGGTTATATTATCTTCATCACTGTAATATAA  197
      |  ||||||||||||| || ||||| ||   || ||||||||| ||||||
seq2  GGCAGTCCCCAAGTTT-CTGGGTTA-ATATCCTCCATCACTGT-ATATAA  182

seq1  TAATAATAAATGCATCTAGGTTCATTAGTATAGAGGAATTTTAATCCAGC  247
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  TAATAAT-AATGCATCTAGGTTCA-TAGTATAGAGGAATTTTAATCCAGC  230

seq1  AGTATTGCTGCTCTGGCATGGGATCACATTCAAAGACTTTCTAGGTCTAT  297
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  AGTATTGCTGCTCTGGCATGGGATCACATCAAAAGACTTTCTAGGTCTAT  280

seq1  GTAATCTGGATGGAATACAGAC-ACATCACACCATTAATCCCTTTAATGC  346
      |||||||||| ||||||||||| ||||||||||||||||||| |||||||
seq2  GTAATCTGGA-GGAATACAGACAACATCACACCATTAATCCC-TTAATGC  328

seq1  AAGAATACAGAAATGTCCTACATATACACCTTTAATCTCAAACTCTC-AA  395
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGAATACAGAAATGTCCTACATATACACCTTTAATCTCAAACTCTCAAA  378

seq1  AGTAAGGCTAGTTTGTAGAAGGAAGCACCCATATTTGAAAGTGTCATCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGCTAGTTTGTAGAAGGAAGCACCCATATTTGAAAGTGTCATCTA  428

seq1  ATTGAGGAGCAGACAAAATGATGAATCAGAGAAAGATTGGCTAAAGTGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGAGCAGACAAAATGATGAATCAGAGAAAGATTGGCTAAAGTGAG  478

seq1  GTAGAGATAGGATACATCCAGCTCTCATGAGAAGAGTCAGGAATGAGAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATAGGATACATCCAGCTCTCATGAGAAGAGTCAGGAATGAGAGA  528

seq1  CTACTAAAGAGTACAACACAGAGACAATTACTCAGGTCAGTACAATTCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAAGAGTACAACACAGAGACAATTACTCAGGTCAGTACAATTCAG  578

seq1  GTGAATGCAGTCACATTGGTTTATTTTGTGAAGTTCATGCTGTGCATGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGCAGTCACATTGGTTTATTTTGTGAAGTTCATGCTGTGCATGTC  628

seq1  AGCAGAGACAGTGGAAGCCAGAAAATATGTAGGATCTAAAAGATTAGGGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGACAGTGGAAGCCAGAAAATATGTAGGATCTAAAAGATTAGGGC  678

seq1  AAATTTCCAGAGTTAGTTTAAGGCCAAACAGCCAGACTGAACCAATCAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCAGAGTTAGTTTAAGGCCAAACAGCCAGACTGAACCAATCAGG  728

seq1  TTGGAGAGGAATGTGAAGCAAAACAGCTGAGTTGAACCAGCCAGCCAGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGAATGTGAAGCAAAACAGCTGAGTTGAACCAGCCAGCCAGAG  778

seq1  TTCAGAAAGAACTAAAAAGCTTATTCAGCAGTAAGCCTTTGAGATGACAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGAACTAAAAAGCTTATTCAGCAGTAAGCCTTTGAGATGACAA  828

seq1  CTATATATGTAGATTAAAGTTACTTTTACACATTAGTATCTGGAACATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATGTAGATTAAAGTTACTTTTACACATTAGTATCTGGAACATTC  878

seq1  TTATGGAGTCACAATACAATAGATTGTGGATAATGCATGCTTATGTTCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGTCACAATACAATAGATTGTGGATAATGCATGCTTATGTTCAA  928

seq1  TGAAAGGAAAATAATGTTCACTAACAAAAGACAGTTGTGAAAAATATGGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAAAATAATGTTCACTAACAAAAGACAGTTGTGAAAAATATGGA  978

seq1  GAAATCTGGGAAATGGTGCAGACAATGTGAAAGAGTTAGACTGAACCATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGGGAAATGGTGCAGACAATGTGAAAGAGTTAGACTGAACCATA  1028

seq1  TATTTACCTTGGCAATGGGGATATTTTATTTTGTAAAGACATTTATAAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCTTGGCAATGGGGATATTTTATTTTGTAAAGACATTTATAAAG  1078

seq1  TAAGAGTAAATTTGCTTACAGGTATATTTTGTGATCAGTATGAATAATAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTAAATTTGCTTACAGGTATATTTTGTGATCAGTATGAATAATAG  1128

seq1  CAGAATTGTTTACATTTAAAACACATCATTATCACCACAAGTCTTTTGCT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGTTTACATTTAAAACACATCATTATCACCACAAGTCTTTTGCT  1178

seq1  GGCCTTATTCTGTCAGCCTATATTATATATAACTAAGAATTC  1237
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATTCTGTCAGCCTATATTATATATAACTAAGAATTC  1220