BAC Information

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BAC

Clone NameB6Ng01-019J07
ChromosomeY (Build37)6 (Build37)
Map Location 573,321 - 573,35843,831,446 - 43,832,358
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019J07.bB6Ng01-019J07.g
ACCDH852627DH852628
length4451,063
definitionDH852627|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J07, 5' end.DH852628|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,358)(43,831,446 - 43,832,358)
sequence
gaattccagagtggttataccagcttgcaatccagcaatggaagagtgct
gttatttcttcacatcctcaccagcatctgctgtcacctcagttttttat
cttagccattctgactggtgtgaggtggaatctcaaagttgttttgattt
gcatttcctaaatacccatggaaggagttactgagacaaagtttagagca
gagactgaaggaatgaccatccagagactacccaacttgtggatctatcc
cataaacaaccaccagacctagacactattgcagatgccaacaagagctt
gctgacaggagcctggtatagttgtctccagagaggctctgccagtgcct
ggtaaatactgaagtggatgctcacagtcatctgttggacagagcacagg
gtccctaatgaaggagctagagaaagtacccaaggagctgaaggg
gaattcccctccccccaaaaaagccctttgatactgagatactgatcatc
atgtgatgtcatttgagaaggggtcctatggatataactaattcaaaaga
gtaggtccttctacagaaagagtgccttgttagagggaaacacagaaatc
tctcttagggtttccattgctgtgaagagactccaggaccaaggcaactc
ttatataggtgtactggctagttttgtgtcaacttgacacaggctggagt
tatcacagagaaaggagcttcagttggggaaatgcctccatgagatccag
ctgtaaggcattttctcaattagtgatcaaggtgggaggttcccttgtgg
gtggtgccatctctgggctggtagtcttggttctataagagagcaggctg
agcaagccagagcaagtaagccagtaaggaacatccctccatggctctgc
atcagctcctgcttcctgacctgcttgagttccagtcctgacttcctttg
gtgatgaacagcagtatgcaagtgtaagctgaataaaccctttcctcccc
aactgcttcttggtcatgatgttttgtccaggaatagaaaccctgactaa
gacaataggacatttaactggggagcctcacagattctgacgttcagtta
gttattcttgtggaaaagtttttatcaagtcaacagggaaaaatcaatgt
ttgtgctgatgagttatctttctctgcatttttaccaatgggtgtttttg
gtttttgcactcttcttctttctctctattaactaaaaatctcaatacaa
tatatttttatcttgcttccccctcccctatttcctccaagattcttcct
accactctatctacccactatattttacttaagaatgtactagatacata
cccatgttacacatgcatcattgcttataaatcattctatttagaagtca
tttgcttcttaaattttatgtctcagtttgaacagtcctctattatttaa
ataatttcttcaaagttagaaaatgaaccgttaaaatgagtaggctttcc
tccagaatttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573358
seq2: B6Ng01-019J07.b_450_487

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38
      ||| |||||||||||||||||||||||||||| |||||
seq2  ATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGG  38

seq1: chr6_43831446_43832358
seq2: B6Ng01-019J07.g_228_1132

seq1  GGTTTCCATTGCTGTGAAGAGACTCCAGGACCAAGGCAACTCTTATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCATTGCTGTGAAGAGACTCCAGGACCAAGGCAACTCTTATATAG  50

seq1  GTGTACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCACAG  100

seq1  AGAAAGGAGCTTCAGTTGGGGAAATGCCTCCATGAGATCCAGCTGTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGCTTCAGTTGGGGAAATGCCTCCATGAGATCCAGCTGTAAGG  150

seq1  CATTTTCTCAATTAGTGATCAAGGTGGGAGGTTCCCTTGTGGGTGGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCAATTAGTGATCAAGGTGGGAGGTTCCCTTGTGGGTGGTGCC  200

seq1  ATCTCTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCC  250

seq1  AGAGCAAGTAAGCCAGTAAGGAACATCCCTCCATGGCTCTGCATCAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGTAAGCCAGTAAGGAACATCCCTCCATGGCTCTGCATCAGCTC  300

seq1  CTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAA  350

seq1  CAGCAGTATGCAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTATGCAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTGCTT  400

seq1  CTTGGTCATGATGTTTTGTCCAGGAATAGAAACCCTGACTAAGACAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATGATGTTTTGTCCAGGAATAGAAACCCTGACTAAGACAATAG  450

seq1  GACATTTAACTGGGGAGCCTCACAGATTCTGACGTTCAGTTAGTTATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTAACTGGGGAGCCTCACAGATTCTGACGTTCAGTTAGTTATTCT  500

seq1  TGTGGAAAAGTTTTTATCAAGTCAACAGGGAAAAATCAATGTTTGTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAAGTTTTTATCAAGTCAACAGGGAAAAATCAATGTTTGTGCTG  550

seq1  ATGAGTTATCTTTCTCTGCATTTTTACCAATGGGTGTTTTTGGTTTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTATCTTTCTCTGCATTTTTACCAATGGGTGTTTTTGGTTTTTGC  600

seq1  ACTCTTCTTCTTTCTCTCTATTAACTAAAAATCTCAATACAATATATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTTCTTTCTCTCTATTAACTAAAAATCTCAATACAATATATTTT  650

seq1  TATCTTGCTTCCCCCTCCCCTATTTCCTCCAAGATTCTTCCTACCACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCTTCCCCCTCCCCTATTTCCTCCAAGATTCTTCCTACCACTCT  700

seq1  ATCTACCCACTATATTTTACTTAAGAATGTACTAGATACATACCCATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCCACTATATTTTACTTAAGAATGTACTAGATACATACCCATGTT  750

seq1  ACACATGCATTCATTGCTTATAAAATCATTCTATTTAGAAGTCATTTGCT  800
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  ACACATGCA-TCATTGCTTAT-AAATCATTCTATTTAGAAGTCATTTGCT  798

seq1  TCTTAATTTTTATGTCTCAGGTTTGAACAGTCCTCTATTATTTTAATTAT  850
      |||||| |||||||||||| ||||||||||||||||||||||| ||| | 
seq2  TCTTAAATTTTATGTCTCA-GTTTGAACAGTCCTCTATTATTTAAATAA-  846

seq1  TTTTCTTCAAAGTTTAGAAAAATGATCGTTTAAAATGATTGGCTTTTCTT  900
       ||||||||||| |||| ||||||| |  ||||||||| | |  |||| |
seq2  -TTTCTTCAAAG-TTAG-AAAATGAACCGTTAAAATGAGTAGGCTTTCCT  893

seq1  CCAGAAATTTGCA  913
      |||| ||||||||
seq2  CCAG-AATTTGCA  905