BAC Information

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BAC

Clone NameB6Ng01-021H07
Chromosome1 (Build37)Y (Build37)
Map Location 118,707,331 - 118,708,098573,321 - 573,515
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021H07.bB6Ng01-021H07.g
ACCDH853955DH853956
length1,053489
definitionDH853955|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H07, 5' end.DH853956|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,707,331 - 118,708,098)(573,321 - 573,515)
sequence
gaattctctgtttatctctgtaccctaatttaaattagatgatttggttt
gttgttatctaatttcttgagttctttatatatttatatattagtcatct
gtcagatataggggtcatgtcgtacttttcagtctgtagtctgccatttc
atccaattaatggtattgtttgccttgtagtcactttttagctttagaag
gtcccatttaaaaattgttgatctcagagcctgatagattgctgttctgc
tcaatatgttgtctcttgtaccattgcattcaagactattccccactcag
atggactgtatttgcttgggctaaggtataggagaggagtttttgccttg
ttgaggtgggtgtgtcactgtgggcatcagctttaatacctttgtcctag
ctgcctgaatgccagttgtctcctattgacctgcagaagatgtagaactc
tcagttcctcctgtgccatgcatttctaaatgctgccatactcttgtctt
gatgataaaggattgaacctctgtagctaagtttctattgtatcttctaa
gcctgagatggtctcttatgttgccttgatgatgcttatgtcaagaacgc
cttgtcaattttctagattttatgtttccaagattgtcaggttgtatatt
cttcattgttcctattttagtttttagaccttaacatttttattcatttt
ctttatctatttgaatgtattgcactatacttcctgcctcagtccagggg
aatgccagggtcaagaagtaggagtgagttggtagggaagcagggcacgt
gaaaacacttttccattgtgtttggacgtgcaacgtgaacagttgagccc
agaatggccttagaggaggcagaggaattttgggatagcatttgaaatat
aaatgaaaaagaaatgtctagtaattaaaaaaagatgatcgactagttaa
ttatattttttatatttgaataatcctctgtaataatttaattatttatt
tttttaaaaccctcatcatcttcatcaataaaactaaggtattttcttgc
att
atggaatgtgcatattgaaggctatgatgctcacctctgaaaccaacagt
gaaagacaaatgtgtaaaccaaaaatattacttgagattatcatttaact
actgttacttagatcatttttgttttattttcttcagtttttaaactcaa
acatgtctcaagtgttagagcaacaatgaagggccagtacagaaattctg
tggttaagaacatggtgtgaggctataccagtacctggcaaacacagaag
tggttgctcacagtcagctattgtatggaacacagggcccccaatggagg
agctagagaaagtacccaaggagctgaaggggtctgcaaccctataagtg
gaacaacaatatgaactaaccagtatccccagagctcatgtctctagctg
catatgtagcagaagatggcctaatcagccatcattgggaagagaggact
gttggtcttgcaaactttatatgccccagtacagaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118707331_118708098
seq2: B6Ng01-021H07.b_346_1095

seq1  GACTGTATTTGCTTGGGCTAAGGTATAGGAGAGGAGTTTTTGCCTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATTTGCTTGGGCTAAGGTATAGGAGAGGAGTTTTTGCCTTGTTG  50

seq1  AGGTGGGTGTGTCACTGTGGGCATCAGCTTTAATACCTTTGTCCTAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTGTGTCACTGTGGGCATCAGCTTTAATACCTTTGTCCTAGCTG  100

seq1  CCTGAATGCCAGTTGTCTCCTATTGACCTGCAGAAGATGTAGAACTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGCCAGTTGTCTCCTATTGACCTGCAGAAGATGTAGAACTCTCA  150

seq1  GTTCCTCCTGTGCCATGCATTTCTAAATGCTGCCATACTCTTGTCTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCTGTGCCATGCATTTCTAAATGCTGCCATACTCTTGTCTTGAT  200

seq1  GATAAAGGATTGAACCTCTGTAGCTAAGTTTCTATTGTATCTTCTAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGATTGAACCTCTGTAGCTAAGTTTCTATTGTATCTTCTAAGCC  250

seq1  TGAGATGGTCTCTTATGTTGCCTTGATGATGCTTATGTCAAGAACGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGTCTCTTATGTTGCCTTGATGATGCTTATGTCAAGAACGCCTT  300

seq1  GTCAATTTTCTAGATTTTATGTTTCCAAGATTGTCAGGTTGTATATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTTCTAGATTTTATGTTTCCAAGATTGTCAGGTTGTATATTCTT  350

seq1  CATTGTTCCTATTTTAGTTTTTAGACCTTAACATTTTTATTCATTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCCTATTTTAGTTTTTAGACCTTAACATTTTTATTCATTTTCTT  400

seq1  TATCTATTTGAATGTATTGCACTATACTTCCTGCCTCAGTCCAGGGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTTGAATGTATTGCACTATACTTCCTGCCTCAGTCCAGGGGAAT  450

seq1  GCCAGGGTCAAGAAGTAGGAGTGAGTTGGTAGGGAAGCAGGGCAGGTGAA  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCAGGGTCAAGAAGTAGGAGTGAGTTGGTAGGGAAGCAGGGCACGTGAA  500

seq1  AACACTTTTCCATTGTGTTTGGACGTGCAACGTGAACAGTTGAGCCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTCCATTGTGTTTGGACGTGCAACGTGAACAGTTGAGCCCAGA  550

seq1  ATGGCCTTAGAGGAGGCAGAGGAATTTTGGGATAGCATTTGAAATATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTAGAGGAGGCAGAGGAATTTTGGGATAGCATTTGAAATATAAA  600

seq1  TGAAAAAAGAAATGTCTAGTAATTTAAAAAAAAAGATGATTGACTAGTTT  650
      || |||||||||||||||||||||   ||||||||||||| |||||| ||
seq2  TG-AAAAAGAAATGTCTAGTAATT---AAAAAAAGATGATCGACTAG-TT  645

seq1  AATTATATTTTCTATTATTTTGAATTAAATCTCTGTAAATAAATTTTATT  700
      ||||||||||| |||   |||||| |||  |||||| |||||  |||| |
seq2  AATTATATTTTTTAT--ATTTGAA-TAATCCTCTGT-AATAA--TTTAAT  689

seq1  TATTTATTTTTTTTTAAAAACCCTCCATCATCTTCATCAGATTAGACTTA  750
      |||||||||||||   |||||||| |||||||||||||| || | || ||
seq2  TATTTATTTTTTT---AAAACCCT-CATCATCTTCATCA-ATAAAAC-TA  733

seq1  AGGTTATTTTCTTGCATT  768
      ||| ||||||||||||||
seq2  AGG-TATTTTCTTGCATT  750

seq1: chrY_573321_573515
seq2: B6Ng01-021H07.g_368_563

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||| ||||| ||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      |||  ||||||||||||||||| |||||||||||| ||||||||||||||
seq2  ATAAGTGGAACAACAATATGAACTAACCAGTATCCCCAGAGCTCATGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||| |||||||||||||| |  ||||||||||||||||
seq2  CTAGCTGCATATGTAGCAGAAGATGGCCTAATCAGCCATCATTGGGAAGA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAA  195
      |||| |  ||||||||||||||||||||||||||||||||| ||||
seq2  GAGGACTGTTGGTCTTGCAAACTTTATATGCCCCAGTACAGAGGAA  196