BAC Information

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BAC

Clone NameB6Ng01-021P09
ChromosomeY (Build37)4 (Build37)
Map Location 1,120,587 - 1,121,06191,602,774 - 91,603,883
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021P09.bB6Ng01-021P09.g
ACCDH854324DH854325
length8291,098
definitionDH854324|Mus musculus domesticus DNA, BAC clone: B6Ng01-021P09, 5' end.DH854325|Mus musculus domesticus DNA, BAC clone: B6Ng01-021P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,587 - 1,121,061)(91,602,774 - 91,603,883)
sequence
gaattctttgttcagttctgagccccattttttttccaatttttattagg
tatttagctcatttacatttcaaatgttataccaaaagtccccatatcca
cccacccccactcccctgcccacccactccccctttttggccctggtgtt
cccctgtactggggcatataaagtttgcaagtccaatgggcctctctttc
cagtgatggccgactaggccatcttttgatatatatgcagctagagtcaa
gagctccggggtactggttagttcataatgttgttccacctatagggttg
cagatccctttagctccttggctactttctctagctcctccattgggagc
cctatgatccatccattagctgactgtgagcatccacttctgtgtttgct
aggccccggcatagctcacaagagacagctatatctgggtcctttcaata
aaatcttgctagtgtatgcaatggtgtcagcgtttggatgctgattatgg
ggtggatccctggatatggcagtctctacatggtgcatcctttcatctca
gctccaaactttgtctctgtaactccttccatgggtgttttgttcccaaa
tctaaggaggggcatagtgtccacacttcagtcttcattctccttgagtt
tcatgtgtttagcaaattatatcttatatcttgggtatcctaggtttggg
gctaatatccactgatcggtgagtacatattgtgtgagtttcctttgtga
atgtgttacctcactcaggatgatgccctccaggtccatccattttgcct
aggaatttcataaattcattctttttaat
gaattcagtatcagaggtaagctcacttatcacttatcagataaatttac
taaaatactttaagaattgaataaaattccatttaattacatagtcacta
tatacacacacatagatagatagatagatagatagatagatagatagata
gatagatagatgcagagacctttatgtatattaaatgtgaatgctataca
aattggttatcccttccctgcttcaggtatctgttacctgttatatggga
tctaggcctggcgaagttttgttgtttgctttgtttcacttttcttagta
acagtctttggtaatggcttaacaatatattgaatttaataaaatgaatg
gaattttatagattaaaatgaactcggttactgacaagtaagtttggtag
aatcacagtaaagagcttagatgaagcaggtgacagagtgtactggaaga
ctgtgcatacaatgaggctgaattccgatgcagtgtgcagtcactgcact
cttggtggactcagtgtgctggaaataggaatgtaacaggaactacaaag
gacataggttttttttttttaactatgaattttcaacttagctacctaaa
tatcataaatttatggtctattgtttaatttgcattcaatatacctacat
gtccattatatctgcagacttgacattctcttgatgaaacagcatgcact
caatttgagaaacagtggaggtagcatttaaaatgtgcaggcatagcttt
tgtgcattttatcaacactgtaaaaaccaccttcgtgcttttggaaactc
catatcatatatctctgaacagcatcgctgtgctacaatttgggtttatt
tctattcacctcatgtacccttatgggaaccactttcaatgtccctgtag
tcatctgtaaagaatatgtatacggatacccattttgtggggctattttt
ttatagatgaggactaccatgtacatgaaggactctgcatatctaataat
actcagtacattactcagtcattactatgctgctgtctatttcaaagata
agatgattcttctagttccagaagaatggaaatagttagaaatggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120587_1121061
seq2: B6Ng01-021P09.b_73_545

seq1  TTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGC  50
      ||||||||||| ||||||||||||||||| |||||||||||||| |||| 
seq2  TTTTTTTTCCAATTTTTATTAGGTATTTAGCTCATTTACATTTCAAATGT  50

seq1  TATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATACCAAAAGT-CCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  99

seq1  CTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTT  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTT  149

seq1  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  199

seq1  TGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCAT  249

seq1  AACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACT  300
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACT  299

seq1  TTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTG  349

seq1  TGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGA  400
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  TGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAG-CTCACAAGAGA  398

seq1  CAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGT  450
      |||||| |||||  ||||||||||||||||||||||||||||||||||||
seq2  CAGCTATATCTGGGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGT  448

seq1  GTCAGCGTTTGGATGCTGATTATGG  475
      |||||||||||||||||||||||||
seq2  GTCAGCGTTTGGATGCTGATTATGG  473

seq1: chr4_91602774_91603883
seq2: B6Ng01-021P09.g_66_1163 (reverse)

seq1  ATGCCATTTCTATCATCTTTCCTATTTCTCTGGAACTAGAAGAATCATCT  50
      |||||||||||| | | ||||| |||  ||||||||||||||||||||| 
seq2  ATGCCATTTCTAAC-TATTTCC-ATTCTTCTGGAACTAGAAGAATCATC-  47

seq1  TTATCTATGAAAATAAGACAGCAGCAGTAGTAATGACTGAGTAATGTACT  100
      |||||| |||||   ||||||||||| |||||||||||||||||||||||
seq2  TTATCTTTGAAA--TAGACAGCAGCA-TAGTAATGACTGAGTAATGTACT  94

seq1  GAGTATTTATATAGATATGCAGAGTCCTTCATGTACATTGTTAGTCATCA  150
      ||||| |||| |||||||||||||||||||||||||| || ||||| |||
seq2  GAGTA-TTAT-TAGATATGCAGAGTCCTTCATGTACA-TGGTAGTCCTCA  141

seq1  TCTATAAAAAAATAAGCCCCACAAAATGGGTATCCGTATTACATATTCTT  200
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TCTATAAAAAAAT-AGCCCCACAAAATGGGTATCCGTA-TACATATTCTT  189

seq1  TACAGATGACTACAGGAACATTGAAAGTGGTTCCCATAAGGGTACATGAG  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACAGATGACTACAGGGACATTGAAAGTGGTTCCCATAAGGGTACATGAG  239

seq1  GTGAATAGAAATAAAACCCAAATTGTAGCACAGCGATGCTGTTCAGAGAT  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGAAAT-AAACCCAAATTGTAGCACAGCGATGCTGTTCAGAGAT  288

seq1  ATATGATATGGAGTTTCCAAAAGCACGAAGGTGGTTTTTACAGTGTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATATGGAGTTTCCAAAAGCACGAAGGTGGTTTTTACAGTGTTGAT  338

seq1  AAAATGCACAAAAGCTATGCCTGCACATTTTAAATGCTACCTCCACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCACAAAAGCTATGCCTGCACATTTTAAATGCTACCTCCACTGTT  388

seq1  TCTCAAATTGAGTGCATGCTGTTTCATCAAGAGAATGTCAAGTCTGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATTGAGTGCATGCTGTTTCATCAAGAGAATGTCAAGTCTGCAGA  438

seq1  TATAATGGACATGTAGGTATATTGAATGCAAATTAAACAATAGACCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGACATGTAGGTATATTGAATGCAAATTAAACAATAGACCATAA  488

seq1  ATTTATGATATTTAGGTAGCTAAGTTGAAAATTCATAGTTAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGATATTTAGGTAGCTAAGTTGAAAATTCATAGTTAAAAAAAAAA  538

seq1  AACCTATGTCCTTTGTAGTTCCTGTTACATTCCTATTTCCAGCACACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGTCCTTTGTAGTTCCTGTTACATTCCTATTTCCAGCACACTGA  588

seq1  GTCCACCAAGAGTGCAGTGACTGCACACTGCATCGGAATTCAGCCTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCAAGAGTGCAGTGACTGCACACTGCATCGGAATTCAGCCTCATT  638

seq1  GTATGCACAGTCTTCCAGTACACTCTGTCACCTGCTTCATCTAAGCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCACAGTCTTCCAGTACACTCTGTCACCTGCTTCATCTAAGCTCTT  688

seq1  TACTGTGATTCTACCAAACTTACTTGTCAGTAACCGAGTTCATTTTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGATTCTACCAAACTTACTTGTCAGTAACCGAGTTCATTTTAATC  738

seq1  TATAAAATTCCATTCATTTTATTAAATTCAATATATTGTTAAGCCATTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTCCATTCATTTTATTAAATTCAATATATTGTTAAGCCATTAC  788

seq1  CAAAGACTGTTACTAAGAAAAGTGAAACAAAGCAAACAACAAAACTTCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTGTTACTAAGAAAAGTGAAACAAAGCAAACAACAAAACTTCGC  838

seq1  CAGGCCTAGATCCCATATAACAGGTAACAGATACCTGAAGCAGGGAAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTAGATCCCATATAACAGGTAACAGATACCTGAAGCAGGGAAGGG  888

seq1  ATAACCAATTTGTATAGCATTCACATTTAATATACATAAAGGTCTCTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAATTTGTATAGCATTCACATTTAATATACATAAAGGTCTCTGCA  938

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATG  988

seq1  TGTGTGTATATAGTGACTATGTAATTAAATGGAATTTTATTCAATTCTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATATAGTGACTATGTAATTAAATGGAATTTTATTCAATTCTTA  1038

seq1  AAGTATTTTAGTAAATTTATCTGATAAGTGATAAGTGAGCTTACCTCTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTAGTAAATTTATCTGATAAGTGATAAGTGAGCTTACCTCTGA  1088

seq1  TACTGAATTC  1110
      ||||||||||
seq2  TACTGAATTC  1098